tomoseqr

tomoseqr reconstructs and visualizes 3D expression patterns from Tomo-seq data, a genome-wide RNA tomography method that combines high-throughput RNA sequencing with cryosectioning for spatially resolved transcriptomics.

Key Features:

• 3D Expression Reconstruction: tomoseqr reconstructs 3D expression patterns from Tomo-seq data.
• 3D Visualization: tomoseqr visualizes the reconstructed 3D expression patterns.

Scientific Applications:

• Spatially Resolved Transcriptomics: tomoseqr enables analysis of genome-wide RNA tomography data to study spatial gene expression patterns.

Methodology:

The package processes Tomo-seq data, which combines high-throughput RNA sequencing with cryosectioning, to reconstruct three-dimensional expression patterns.