zellkonverter

zellkonverter converts between Python AnnData objects and SingleCellExperiment objects to enable interoperability between Python and Bioconductor single-cell data analysis workflows.

Key Features:

• Object Conversion: Converts between Python AnnData objects and SingleCellExperiment objects for cross-platform single-cell data analysis.
• H5AD File I/O: Reads and writes H5AD files used for saving AnnData objects to disk.
• Bioconductor Integration: Provides methods primarily intended for use by downstream Bioconductor packages that wrap Python methods for single-cell data analysis.

Scientific Applications:

• Cross-Platform scRNA-seq Analysis: Enables Bioconductor packages to leverage Python-based single-cell analysis methods by converting data objects between formats.
• Data Exchange: Facilitates transfer of single-cell RNA sequencing data between Python and R/Bioconductor analysis environments.

Methodology:

The package provides conversion methods between AnnData and SingleCellExperiment objects, and includes functions to read and write H5AD files.