BiocParallel
BiocParallel enables parallel computation for processing and analyzing large genomic datasets and BioConductor objects to improve scalability and efficiency.
Key Features:
- Parallel Evaluation: Provides modified and novel implementations of functions to perform computations in parallel for large-scale genomic analyses.
- Integration with BioConductor: Integrates with BioConductor to ensure compatibility with BioConductor objects and workflows.
Scientific Applications:
- Genomic Data Analysis: Enables parallel processing for tasks such as detection and analysis of genetic variants from whole genome sequencing experiments.
- Scalable Processing: Supports scalable summarization and visualization of large genomic datasets through parallel computation.
Methodology:
Implements restrictive queries, compression, iteration, and parallel computing strategies and is implemented in R.
Topics
Collections
Details
- License:
- GPL-3.0
- Tool Type:
- command-line tool, library
- Operating Systems:
- Linux, Windows, Mac
- Programming Languages:
- R
- Added:
- 1/17/2017
- Last Updated:
- 11/25/2024
Operations
Publications
Lawrence M, Morgan M. Scalable Genomics with R and Bioconductor. Statistical Science. 2014;29(2). doi:10.1214/14-sts476. PMID:28018047. PMCID:PMC5181792.