BiocParallel

BiocParallel enables parallel computation for processing and analyzing large genomic datasets and BioConductor objects to improve scalability and efficiency.


Key Features:

  • Parallel Evaluation: Provides modified and novel implementations of functions to perform computations in parallel for large-scale genomic analyses.
  • Integration with BioConductor: Integrates with BioConductor to ensure compatibility with BioConductor objects and workflows.

Scientific Applications:

  • Genomic Data Analysis: Enables parallel processing for tasks such as detection and analysis of genetic variants from whole genome sequencing experiments.
  • Scalable Processing: Supports scalable summarization and visualization of large genomic datasets through parallel computation.

Methodology:

Implements restrictive queries, compression, iteration, and parallel computing strategies and is implemented in R.

Topics

Collections

Details

License:
GPL-3.0
Tool Type:
command-line tool, library
Operating Systems:
Linux, Windows, Mac
Programming Languages:
R
Added:
1/17/2017
Last Updated:
11/25/2024

Operations

Publications

Lawrence M, Morgan M. Scalable Genomics with R and Bioconductor. Statistical Science. 2014;29(2). doi:10.1214/14-sts476. PMID:28018047. PMCID:PMC5181792.

Documentation

Downloads

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