BioExcel genome sequence quality control workflow

Workflow to perform high throughput Next Generation Sequencing (NGS) sequencing quality control stages

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Topics

Sequence analysis

Collections

BioExcel

Details

License:: Apache-2.0
Maturity:: Emerging
Cost:: Free of charge
Tool Type:: command-line tool, library, workflow
Operating Systems:: Linux, Windows, Mac
Programming Languages:: Python
Added:: 10/26/2018
Last Updated:: 6/16/2020

Operations

Publications

Hospital A, Montras A, Gelpí JL, Badia RM, Newhouse S, Dianes JA, et al. Bioexcel Deliverable 2.2 – First Release Of Workflow Blocks And Portals. Zenodo [Internet]. 2016Dec30; Available from: https://zenodo.org/record/263965

DOI: 10.5281/zenodo.263965

Hospital A, Gelpí JL, Dianes JA, Andrio P, White DJ, Ippoliti E, et al. Bioexcel Deliverable 2.3 - User Feedback And Future Roadmap. Zenodo [Internet]. 2017Nov20; Available from: https://zenodo.org/record/1060946

DOI: 10.5281/zenodo.1060946

Documentation

General

https://github.com/bioexcel/BioExcel_SeqQC/blob/master/README.md

Repository README

Downloads

Source code
https://github.com/bioexcel/BioExcel_SeqQC
Pipeline Repository

Links

Other

https://bioexcel.eu/research/projects/use-case-rapid-turnaround-cancer-analysis-pipeline-for-high-throughput-sequencing-data/

(Pipeline Description - this workflow consists of stage 1)

Repository

https://github.com/bioexcel/BioExcel_SeqQC

(Pipeline Repository)

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