biojs-io-annots

biojs-io-annots parses annotation files to extract and standardize genomic annotation data for integration and downstream analysis.


Key Features:

  • Annotation file parsing: Reads and interprets various annotation file formats to extract annotation records associated with genomic data.
  • Format-agnostic parsing: Handles multiple annotation file formats to capture functional annotations such as gene functions and regulatory elements.
  • Integration with visualization tools: Produces parsed annotation data suitable for integration with visualization components for exploration of biological datasets.
  • Data integration support: Facilitates combining annotation data with other biological datasets for comprehensive analyses.

Scientific Applications:

  • Genomic research: Supports studies that require accurate annotation of genes, regulatory elements, and other genomic features.
  • Data integration: Enables integration of annotation data with diverse biological datasets for combined analyses.

Methodology:

Employs robust parsing to extract and interpret data from various annotation file formats.

Topics

Details

Tool Type:
library
Operating Systems:
Linux, Mac
Programming Languages:
JavaScript
Added:
1/22/2015
Last Updated:
12/10/2018

Operations

Data Inputs & Outputs

Formatting

Publications

Yachdav G, Goldberg T, Wilzbach S, Dao D, Shih I, Choudhary S, Crouch S, Franz M, García A, García LJ, Grüning BA, Inupakutika D, Sillitoe I, Thanki AS, Vieira B, Villaveces JM, Schneider MV, Lewis S, Pettifer S, Rost B, Corpas M. Anatomy of BioJS, an open source community for the life sciences. eLife. 2015;4. doi:10.7554/elife.07009. PMID:26153621. PMCID:PMC4495654.

Funding: - Engineering and Physical Sciences Research Council (EPSRC): EP/H043160/1

Documentation