biojs-io-annots
biojs-io-annots parses annotation files to extract and standardize genomic annotation data for integration and downstream analysis.
Key Features:
- Annotation file parsing: Reads and interprets various annotation file formats to extract annotation records associated with genomic data.
- Format-agnostic parsing: Handles multiple annotation file formats to capture functional annotations such as gene functions and regulatory elements.
- Integration with visualization tools: Produces parsed annotation data suitable for integration with visualization components for exploration of biological datasets.
- Data integration support: Facilitates combining annotation data with other biological datasets for comprehensive analyses.
Scientific Applications:
- Genomic research: Supports studies that require accurate annotation of genes, regulatory elements, and other genomic features.
- Data integration: Enables integration of annotation data with diverse biological datasets for combined analyses.
Methodology:
Employs robust parsing to extract and interpret data from various annotation file formats.
Topics
Details
- Tool Type:
- library
- Operating Systems:
- Linux, Mac
- Programming Languages:
- JavaScript
- Added:
- 1/22/2015
- Last Updated:
- 12/10/2018
Operations
Data Inputs & Outputs
Formatting
Inputs
Outputs
Publications
Yachdav G, Goldberg T, Wilzbach S, Dao D, Shih I, Choudhary S, Crouch S, Franz M, García A, García LJ, Grüning BA, Inupakutika D, Sillitoe I, Thanki AS, Vieira B, Villaveces JM, Schneider MV, Lewis S, Pettifer S, Rost B, Corpas M. Anatomy of BioJS, an open source community for the life sciences. eLife. 2015;4. doi:10.7554/elife.07009. PMID:26153621. PMCID:PMC4495654.
DOI: 10.7554/eLife.07009
Funding: - Engineering and Physical Sciences Research Council (EPSRC): EP/H043160/1