biojs-io-clustal

biojs-io-clustal parses Clustal formatted multiple sequence alignment files to extract sequence alignment data for downstream sequence analysis.


Key Features:

  • Clustal File Parsing: Parses Clustal formatted multiple sequence alignment files to extract and enable manipulation of sequence alignment data.
  • BioJS Compatibility: Provides compatibility with the BioJS framework for integration with other BioJS components.

Scientific Applications:

  • Sequence Alignment Analysis: Supports analysis of multiple sequence alignments to identify conserved regions, study sequence variation, and infer functional relationships.
  • Data Visualization: Facilitates visualization of alignment data to aid interpretation of sequence relationships.
  • Evolutionary Biology: Enables study of phylogenetic relationships and evolutionary patterns from alignment data.
  • Molecular Biology: Assists analysis of protein sequence conservation and variation to inform structure-function studies.

Methodology:

Parses Clustal formatted multiple sequence alignment files using the BioJS framework to extract and manipulate alignment data.

Topics

Collections

Details

Tool Type:
library
Operating Systems:
Linux, Mac
Programming Languages:
JavaScript
Added:
1/22/2015
Last Updated:
11/25/2024

Operations

Publications

Yachdav G, Goldberg T, Wilzbach S, Dao D, Shih I, Choudhary S, Crouch S, Franz M, García A, García LJ, Grüning BA, Inupakutika D, Sillitoe I, Thanki AS, Vieira B, Villaveces JM, Schneider MV, Lewis S, Pettifer S, Rost B, Corpas M. Anatomy of BioJS, an open source community for the life sciences. eLife. 2015;4. doi:10.7554/elife.07009. PMID:26153621. PMCID:PMC4495654.

PMID: 26153621
PMCID: PMC4495654
Funding: - Engineering and Physical Sciences Research Council (EPSRC): EP/H043160/1

Documentation