biojs-vis-circularfv

biojs-vis-circularfv renders biological data as circular visualizations to represent genomic features, comparative sequence relationships, and protein domain or motif arrangements for bioinformatics analysis.


Key Features:

  • Circular layout rendering: Renders biological data in a circular format to present features around a circular coordinate space.
  • Genomic feature visualization: Displays genomic features such as genes, exons, and regulatory elements within the circular representation.
  • Comparative visualization: Supports comparison of multiple genomes or sequences using circular representations.
  • Protein domain and motif visualization: Represents protein domains and motifs in a circular format to highlight structural relationships.
  • BioJS/JavaScript implementation: Implemented as a BioJS component using JavaScript to render visualizations compatible with web technologies.

Scientific Applications:

  • Genomic Data Visualization: Displaying genomic features like genes, exons, and regulatory elements in a circular layout.
  • Comparative Genomics: Comparing multiple genomes or sequences in a visually coherent circular format.
  • Protein Structure Analysis: Visualizing protein domains and motifs in a circular format to highlight structural relationships.

Methodology:

Leverages the BioJS framework and uses JavaScript to render circular visualizations of biological data.

Topics

Details

Tool Type:
library
Operating Systems:
Linux, Windows, Mac
Programming Languages:
JavaScript
Added:
1/22/2015
Last Updated:
11/25/2024

Operations

Publications

Gómez J, García LJ, Salazar GA, Villaveces J, Gore S, García A, Martín MJ, Launay G, Alcántara R, del-Toro N, Dumousseau M, Orchard S, Velankar S, Hermjakob H, Zong C, Ping P, Corpas M, Jiménez RC. BioJS: an open source JavaScript framework for biological data visualization. Bioinformatics. 2013;29(8):1103-1104. doi:10.1093/bioinformatics/btt100. PMID:23435069. PMCID:PMC3624812.

Documentation