biojs-vis-circularfv
biojs-vis-circularfv renders biological data as circular visualizations to represent genomic features, comparative sequence relationships, and protein domain or motif arrangements for bioinformatics analysis.
Key Features:
- Circular layout rendering: Renders biological data in a circular format to present features around a circular coordinate space.
- Genomic feature visualization: Displays genomic features such as genes, exons, and regulatory elements within the circular representation.
- Comparative visualization: Supports comparison of multiple genomes or sequences using circular representations.
- Protein domain and motif visualization: Represents protein domains and motifs in a circular format to highlight structural relationships.
- BioJS/JavaScript implementation: Implemented as a BioJS component using JavaScript to render visualizations compatible with web technologies.
Scientific Applications:
- Genomic Data Visualization: Displaying genomic features like genes, exons, and regulatory elements in a circular layout.
- Comparative Genomics: Comparing multiple genomes or sequences in a visually coherent circular format.
- Protein Structure Analysis: Visualizing protein domains and motifs in a circular format to highlight structural relationships.
Methodology:
Leverages the BioJS framework and uses JavaScript to render circular visualizations of biological data.
Topics
Details
- Tool Type:
- library
- Operating Systems:
- Linux, Windows, Mac
- Programming Languages:
- JavaScript
- Added:
- 1/22/2015
- Last Updated:
- 11/25/2024
Operations
Publications
Gómez J, García LJ, Salazar GA, Villaveces J, Gore S, García A, Martín MJ, Launay G, Alcántara R, del-Toro N, Dumousseau M, Orchard S, Velankar S, Hermjakob H, Zong C, Ping P, Corpas M, Jiménez RC. BioJS: an open source JavaScript framework for biological data visualization. Bioinformatics. 2013;29(8):1103-1104. doi:10.1093/bioinformatics/btt100. PMID:23435069. PMCID:PMC3624812.