biojs-vis-circularnet

biojs-vis-circularnet visualizes biological networks in a circular layout to represent complex interactions such as gene interactions, regulatory pathways, genomic variations, protein–protein interactions, and metabolic pathways.


Key Features:

  • Circular Network Visualization: Renders complex biological interactions in a circular layout to facilitate interpretation of network structures.
  • Support for Multiple Network Types: Supports visualization of gene interactions, regulatory pathways, genomic variations, protein–protein interactions, and metabolic pathways.
  • BioJS Framework Compatibility: Integrates with the BioJS framework to enable compatibility with diverse datasets and interoperation with other visualization components.

Scientific Applications:

  • Genomic Data Analysis: Visualizing gene interactions, regulatory pathways, and genomic variations.
  • Proteomics and Metabolomics: Mapping protein–protein interactions and metabolic pathways.
  • Systems Biology: Integrating multiple biological network types into cohesive network-level representations.

Methodology:

Leverages the BioJS framework to ensure compatibility with diverse datasets and integration with other visualization tools.

Topics

Details

Tool Type:
library
Operating Systems:
Linux, Mac
Programming Languages:
JavaScript
Added:
1/22/2015
Last Updated:
11/25/2024

Operations

Publications

Yachdav G, Goldberg T, Wilzbach S, Dao D, Shih I, Choudhary S, Crouch S, Franz M, García A, García LJ, Grüning BA, Inupakutika D, Sillitoe I, Thanki AS, Vieira B, Villaveces JM, Schneider MV, Lewis S, Pettifer S, Rost B, Corpas M. Anatomy of BioJS, an open source community for the life sciences. eLife. 2015;4. doi:10.7554/elife.07009. PMID:26153621. PMCID:PMC4495654.

PMID: 26153621
PMCID: PMC4495654
Funding: - Engineering and Physical Sciences Research Council (EPSRC): EP/H043160/1

Documentation