biojs-vis-hgv
biojs-vis-hgv visualizes human genetic variants and their annotations to facilitate exploration and interpretation of variant positions for studies of disease, evolutionary change, and genomic diversity.
Key Features:
- Integration with BioJS Framework: Implemented as a BioJS component, it integrates with BioJS-compliant web technologies for embedding variant visualizations in bioinformatics platforms.
- Multi-Source Data Representation: Pools genetic variant data from multiple sources to provide a comprehensive view for comparative analysis across datasets.
- Interactive Visualization: Renders sequences and variant sites at varying levels of detail with adjustable display granularity and dynamic representation of variant annotations.
Scientific Applications:
- Disease Research: Supports identification and visualization of driver variants and other disease-associated variants to aid interpretation of genetic contributions to health conditions.
- Evolutionary Biology: Enables examination of variant patterns across species or populations to study evolutionary change.
- Genomic Diversity Studies: Facilitates visualization of genetic variation for analyses of biological diversity and population genetics.
Methodology:
biojs-vis-hgv employs a layered approach to data visualization, allowing adjustment of the granularity of displayed information.
Topics
Details
- License:
- Apache-2.0
- Tool Type:
- library
- Operating Systems:
- Linux, Windows, Mac
- Programming Languages:
- JavaScript
- Added:
- 9/27/2015
- Last Updated:
- 12/10/2018
Operations
Data Inputs & Outputs
Protein modelling (mutation)
Publications
Choudhary S, Garcia L, Nightingale A, Martin M. BioJS-HGV Viewer: Genetic Variation Visualizer. Unknown Journal. 2015. doi:10.1101/032573.
DOI: 10.1101/032573