biojs-vis-hgv

biojs-vis-hgv visualizes human genetic variants and their annotations to facilitate exploration and interpretation of variant positions for studies of disease, evolutionary change, and genomic diversity.


Key Features:

  • Integration with BioJS Framework: Implemented as a BioJS component, it integrates with BioJS-compliant web technologies for embedding variant visualizations in bioinformatics platforms.
  • Multi-Source Data Representation: Pools genetic variant data from multiple sources to provide a comprehensive view for comparative analysis across datasets.
  • Interactive Visualization: Renders sequences and variant sites at varying levels of detail with adjustable display granularity and dynamic representation of variant annotations.

Scientific Applications:

  • Disease Research: Supports identification and visualization of driver variants and other disease-associated variants to aid interpretation of genetic contributions to health conditions.
  • Evolutionary Biology: Enables examination of variant patterns across species or populations to study evolutionary change.
  • Genomic Diversity Studies: Facilitates visualization of genetic variation for analyses of biological diversity and population genetics.

Methodology:

biojs-vis-hgv employs a layered approach to data visualization, allowing adjustment of the granularity of displayed information.

Topics

Details

License:
Apache-2.0
Tool Type:
library
Operating Systems:
Linux, Windows, Mac
Programming Languages:
JavaScript
Added:
9/27/2015
Last Updated:
12/10/2018

Operations

Data Inputs & Outputs

Publications

Choudhary S, Garcia L, Nightingale A, Martin M. BioJS-HGV Viewer: Genetic Variation Visualizer. Unknown Journal. 2015. doi:10.1101/032573.

Documentation