biojs-vis-hpafeature

biojs-vis-hpafeature visualizes summary features of protein expression data from the Human Protein Atlas to support exploration of tissue- and cell-specific protein localization.


Key Features:

  • Summary feature representation: Represents summary features of biological data with an initial focus on protein expression.
  • Data Visualization: Visualizes complex protein expression data to provide clear and interpretable graphical representations.
  • Integration with Human Protein Atlas: Displays information derived from the Human Protein Atlas, including tissue- and cell-specific protein expression.

Scientific Applications:

  • Protein Expression Analysis: Enables exploration of protein expression patterns from HPA to inform studies of cellular function and disease mechanisms.
  • Tissue- and Cell-specific Localization Studies: Supports investigation of protein localization across tissues and cell types using HPA data.

Methodology:

The provided description does not specify computational methods, algorithms, file formats, or processing steps.

Topics

Details

Tool Type:
library
Operating Systems:
Linux, Mac
Programming Languages:
JavaScript
Added:
1/22/2015
Last Updated:
11/25/2024

Operations

Publications

Yachdav G, Goldberg T, Wilzbach S, Dao D, Shih I, Choudhary S, Crouch S, Franz M, García A, García LJ, Grüning BA, Inupakutika D, Sillitoe I, Thanki AS, Vieira B, Villaveces JM, Schneider MV, Lewis S, Pettifer S, Rost B, Corpas M. Anatomy of BioJS, an open source community for the life sciences. eLife. 2015;4. doi:10.7554/elife.07009. PMID:26153621. PMCID:PMC4495654.

PMID: 26153621
PMCID: PMC4495654
Funding: - Engineering and Physical Sciences Research Council (EPSRC): EP/H043160/1

Documentation