biojs-vis-interactions-d3
biojs-vis-interactions-d3 visualizes protein interaction networks using D3.js to represent and analyze complex biological interaction datasets.
Key Features:
- D3.js-based rendering: Renders protein–protein interaction networks using the D3.js data-driven document manipulation library.
- Network representation: Maps proteins to nodes and interactions to edges to represent network topology and relationships.
- Scalable visualization: Produces scalable network diagrams intended to handle large numbers of interactions while maintaining visual clarity.
- Data-driven mapping: Binds input interaction data to visual elements so data attributes inform layout and styling.
Scientific Applications:
- Systems Biology: Supports analysis of protein interaction topologies within cellular networks.
- Drug Discovery and Development: Assists identification of potential drug targets by mapping interaction pathways relevant to disease mechanisms.
- Functional Genomics: Aids inference of gene function through visualization of protein–protein interaction patterns.
Methodology:
Implements D3.js data-driven document manipulation and advanced data visualization techniques to transform raw biological interaction data into scalable network diagrams.
Topics
Details
- Tool Type:
- library
- Operating Systems:
- Linux, Mac
- Programming Languages:
- JavaScript
- Added:
- 1/22/2015
- Last Updated:
- 11/25/2024
Operations
Publications
Yachdav G, Goldberg T, Wilzbach S, Dao D, Shih I, Choudhary S, Crouch S, Franz M, García A, García LJ, Grüning BA, Inupakutika D, Sillitoe I, Thanki AS, Vieira B, Villaveces JM, Schneider MV, Lewis S, Pettifer S, Rost B, Corpas M. Anatomy of BioJS, an open source community for the life sciences. eLife. 2015;4. doi:10.7554/elife.07009. PMID:26153621. PMCID:PMC4495654.
DOI: 10.7554/elife.07009
PMID: 26153621
PMCID: PMC4495654
Funding: - Engineering and Physical Sciences Research Council (EPSRC): EP/H043160/1