biojs-vis-keggviewer
biojs-vis-keggviewer visualizes Kyoto Encyclopedia of Genes and Genomes (KEGG) pathways and overlays functional data such as gene expression and protein interaction data to support interpretation of cellular signaling and regulatory networks.
Key Features:
- Visualization of KEGG pathways: Renders graphical representations of Kyoto Encyclopedia of Genes and Genomes (KEGG) pathways for analysis of cellular functions and signaling networks.
- Integration with functional data: Overlays experimental results such as gene expression and protein interaction data onto pathway diagrams.
Scientific Applications:
- Pathway visualization and analysis: Enables visualization and analysis of signaling and regulatory pathways from KEGG.
- Interpretation of large-scale studies: Supports interpretation of expression profiling and functional screens by mapping results onto pathways.
- Molecular mechanism elucidation: Facilitates integration of experimental data with KEGG pathways to generate insights into molecular mechanisms underlying biological processes and diseases.
Methodology:
Leverages BioJS standards to create a component that integrates with web-based applications.
Topics
Details
- License:
- Apache-2.0
- Tool Type:
- library
- Operating Systems:
- Linux, Mac
- Programming Languages:
- JavaScript
- Added:
- 9/26/2015
- Last Updated:
- 1/15/2019
Operations
Data Inputs & Outputs
Pathway or network visualisation
Publications
Villaveces JM, Jimenez RC, Habermann BH. KEGGViewer, a BioJS component to visualize KEGG Pathways. F1000Research. 2014;3:43. doi:10.12688/f1000research.3-43.v1. PMID:24715980. PMCID:PMC3954160.