biojs-vis-sequence

biojs-vis-sequence visualizes biological sequences to support analysis and interpretation of genomic and amino acid (protein) sequence data.


Key Features:

  • Sequence rendering: Renders genomic and amino acid sequences for visual inspection.
  • Comparative visualization: Facilitates comparison of sequences across species or within gene families.
  • Scalability and integration: Architecture accommodates large datasets and supports integration with other BioJS components and external data sources.

Scientific Applications:

  • Genomic analysis: Visualization of genomic sequences to aid identification of genetic variation.
  • Protein structure studies: Visualization of amino acid sequences to support inference of structural and functional properties of proteins.
  • Comparative genomics: Comparison of sequences across species or within gene families to support evolutionary studies.

Methodology:

Implemented as a BioJS component with an architecture for scalability and integration with other BioJS components and external data sources.

Topics

Details

Tool Type:
library
Operating Systems:
Linux, Windows, Mac
Programming Languages:
JavaScript
Added:
1/22/2015
Last Updated:
11/25/2024

Operations

Publications

Yachdav G, Goldberg T, Wilzbach S, Dao D, Shih I, Choudhary S, Crouch S, Franz M, García A, García LJ, Grüning BA, Inupakutika D, Sillitoe I, Thanki AS, Vieira B, Villaveces JM, Schneider MV, Lewis S, Pettifer S, Rost B, Corpas M. Anatomy of BioJS, an open source community for the life sciences. eLife. 2015;4. doi:10.7554/elife.07009. PMID:26153621. PMCID:PMC4495654.

PMID: 26153621
PMCID: PMC4495654
Funding: - Engineering and Physical Sciences Research Council (EPSRC): EP/H043160/1

Documentation