biojs-vis-wigexplorer
biojs-vis-wigexplorer renders wig-formatted files to visualize genome-wide signal and coverage data for genomic analyses such as gene expression and epigenetic studies.
Key Features:
- Visualization of Wig-Formatted Data: Parses and displays wig files containing genome-wide measurements of coverage or signal intensity across genomic regions.
- Integration with Genome Browsers: Provides compatibility with genome browsers such as the UCSC Genome Browser to incorporate wig tracks into broader genomic contexts.
- Component Interaction via Predefined Events: Exposes predefined events for programmatic interaction with other BioJS components.
- BioJS Standard Compliance: Implements the BioJS standard specification to support interoperability within the BioJS ecosystem.
Scientific Applications:
- Gene expression analysis: Visualization of coverage or signal tracks to aid interpretation of gene expression datasets.
- Epigenetic modification mapping: Displaying genome-wide signal patterns relevant to epigenetic studies.
- Genome-wide signal exploration: Examination of coverage and signal intensity across genomic regions to support hypothesis generation and data interpretation.
Methodology:
Implements the BioJS standard specification and uses predefined events for component interaction.
Topics
Details
- Tool Type:
- library
- Operating Systems:
- Linux, Windows, Mac
- Programming Languages:
- JavaScript
- Added:
- 1/22/2015
- Last Updated:
- 12/10/2018
Operations
Data Inputs & Outputs
Visualisation
Inputs
Outputs
Publications
Thanki AS, Jimenez RC, Kaithakottil GG, Corpas M, Davey RP. wigExplorer, a BioJS component to visualise wig data. F1000Research. 2016;3:53. doi:10.12688/f1000research.3-53.v3. PMID:27781080. PMCID:PMC5054804.