biojs-vis-wigexplorer

biojs-vis-wigexplorer renders wig-formatted files to visualize genome-wide signal and coverage data for genomic analyses such as gene expression and epigenetic studies.


Key Features:

  • Visualization of Wig-Formatted Data: Parses and displays wig files containing genome-wide measurements of coverage or signal intensity across genomic regions.
  • Integration with Genome Browsers: Provides compatibility with genome browsers such as the UCSC Genome Browser to incorporate wig tracks into broader genomic contexts.
  • Component Interaction via Predefined Events: Exposes predefined events for programmatic interaction with other BioJS components.
  • BioJS Standard Compliance: Implements the BioJS standard specification to support interoperability within the BioJS ecosystem.

Scientific Applications:

  • Gene expression analysis: Visualization of coverage or signal tracks to aid interpretation of gene expression datasets.
  • Epigenetic modification mapping: Displaying genome-wide signal patterns relevant to epigenetic studies.
  • Genome-wide signal exploration: Examination of coverage and signal intensity across genomic regions to support hypothesis generation and data interpretation.

Methodology:

Implements the BioJS standard specification and uses predefined events for component interaction.

Topics

Details

Tool Type:
library
Operating Systems:
Linux, Windows, Mac
Programming Languages:
JavaScript
Added:
1/22/2015
Last Updated:
12/10/2018

Operations

Data Inputs & Outputs

Visualisation

Publications

Thanki AS, Jimenez RC, Kaithakottil GG, Corpas M, Davey RP. wigExplorer, a BioJS component to visualise wig data. F1000Research. 2016;3:53. doi:10.12688/f1000research.3-53.v3. PMID:27781080. PMCID:PMC5054804.

Documentation