Bioregistry
Bioregistry integrates and harmonizes identifiers from 23 existing registries to provide standardized identification and interoperability of biomedical entities such as small molecules, proteins, cell lines, and clinical trials.
Key Features:
- Comprehensive Integration: Synthesizes data from 23 existing registries to produce an expansive catalog of identifiers for biomedical entities including small molecules, proteins, cell lines, and clinical trials.
- Open-source, community-curated metaregistry: Aggregates mappings and metadata across source registries under a community-curated model using public infrastructure and automation.
- Sustainable Registry Model: Operates under open licenses (MIT and CC0) with a governance framework and automated processes to enable ongoing maintenance and metadata standardization.
Scientific Applications:
- Standardized Annotation: Enables standardized annotation of datasets, models, ontologies, and literature through consistent identifier usage.
- Data Integration and Interoperability: Supports integration of disparate biomedical data sources by providing unified identifier mappings and metadata for reuse across research contexts.
Methodology:
Synthesizes registry entries by aggregating mappings and metadata from source registries and employs public infrastructure and automation technologies to maintain and update identifiers and metadata.
Topics
Details
- License:
- CC0-1.0
- Maturity:
- Mature
- Cost:
- Free of charge
- Tool Type:
- web application
- Operating Systems:
- Mac, Linux, Windows
- Programming Languages:
- Python
- Added:
- 8/1/2022
- Last Updated:
- 11/24/2024
Operations
Data Inputs & Outputs
Format validation
Inputs
Outputs
Publications
Hoyt CT, Balk M, Callahan TJ, Domingo-Fernández D, Haendel MA, Hegde HB, Himmelstein DS, Karis K, Kunze J, Lubiana T, Matentzoglu N, McMurry J, Moxon S, Mungall CJ, Rutz A, Unni DR, Willighagen E, Winston D, Gyori BM. Unifying the Identification of Biomedical Entities with the Bioregistry. Unknown Journal. 2022. doi:10.1101/2022.07.08.499378.
Documentation
Downloads
- Downloads pagehttps://bioregistry.io/download
- Source codehttps://github.com/biopragmatics/bioregistry