BIP
BIP manages phenotypic trait data for Brassica species to support research and breeding.
Key Features:
- Phenotypic trait data: Stores comprehensive trait measurements and associated metadata for Brassica species.
- Species coverage: Includes Brassica species cultivated for human consumption (vegetables), livestock fodder, and biofuel production.
- Data model (CropStoreDB): Built on the CropStoreDB schema for crop-related data management.
- Experimental metadata: Captures information on experimental plant materials and trial designs used in studies.
- Cross-crop adaptability: Implements trait data management strategies that can be adapted to various crop datasets beyond Brassica.
Scientific Applications:
- Brassica research and breeding: Serves as a central repository of phenotypic data to support research and breeding experiments.
- Comparative and cross-crop analyses: Enables trait-based comparisons and analyses across crop datasets through an adaptable schema.
- Crop improvement for specific uses: Supports development and evaluation of Brassica crops for vegetable, fodder, and biofuel production.
Methodology:
Built upon the CropStoreDB schema for data modeling and management of phenotypic traits and associated experimental metadata.
Topics
Details
- License:
- GPL-3.0
- Maturity:
- Emerging
- Cost:
- Free of charge (with restrictions)
- Tool Type:
- web application
- Operating Systems:
- Linux, Windows, Mac
- Programming Languages:
- Ruby
- Added:
- 2/2/2017
- Last Updated:
- 6/16/2020
Operations
Publications
Eckes AH, Gubała T, Nowakowski P, Szymczyszyn T, Wells R, Irwin JA, Horro C, Hancock JM, King G, Dyer SC, Jurkowski W. Introducing the Brassica Information Portal: Towards integrating genotypic and phenotypic Brassica crop data. F1000Research. 2017;6:465. doi:10.12688/f1000research.11301.1. PMID:28529710. PMCID:PMC5428495.
Funding: - Biotechnology and Biological Sciences Research Council: BB/J004669/1, BB/L002124/1
- Horizon 2020: 676559
Documentation
API documentation
https://bip.earlham.ac.uk/api_documentationLinks
Repository
https://github.com/TGAC/brassica