BIP
BIP manages phenotypic trait data for Brassica species to support research and breeding.
Key Features:
- Phenotypic trait data: Stores comprehensive trait measurements and associated metadata for Brassica species.
- Species coverage: Includes Brassica species cultivated for human consumption (vegetables), livestock fodder, and biofuel production.
- Data model (CropStoreDB): Built on the CropStoreDB schema for crop-related data management.
- Experimental metadata: Captures information on experimental plant materials and trial designs used in studies.
- Cross-crop adaptability: Implements trait data management strategies that can be adapted to various crop datasets beyond Brassica.
Scientific Applications:
- Brassica research and breeding: Serves as a central repository of phenotypic data to support research and breeding experiments.
- Comparative and cross-crop analyses: Enables trait-based comparisons and analyses across crop datasets through an adaptable schema.
- Crop improvement for specific uses: Supports development and evaluation of Brassica crops for vegetable, fodder, and biofuel production.
Methodology:
Built upon the CropStoreDB schema for data modeling and management of phenotypic traits and associated experimental metadata.
Topics
Details
- License:
- GPL-3.0
- Maturity:
- Emerging
- Cost:
- Free of charge (with restrictions)
- Tool Type:
- web application
- Operating Systems:
- Linux, Windows, Mac
- Programming Languages:
- Ruby
- Added:
- 2/2/2017
- Last Updated:
- 6/16/2020
Operations
Data Inputs & Outputs
Aggregation
Outputs
Publications
Eckes AH, Gubała T, Nowakowski P, Szymczyszyn T, Wells R, Irwin JA, Horro C, Hancock JM, King G, Dyer SC, Jurkowski W. Introducing the Brassica Information Portal: Towards integrating genotypic and phenotypic Brassica crop data. F1000Research. 2017;6:465. doi:10.12688/f1000research.11301.1. PMID:28529710. PMCID:PMC5428495.
Funding: - Biotechnology and Biological Sciences Research Council: BB/J004669/1, BB/L002124/1
- Horizon 2020: 676559
Documentation
API documentation
https://bip.earlham.ac.uk/api_documentationLinks
Repository
https://github.com/TGAC/brassica