blastxml_to_top_descr

This tool is a short Python script to parse a BLAST XML file, and extract the identifiers with description for the top matches (by default the top 3), and output these as a simple tabular file along with the query identifiers.

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Topics

Sequence analysis

Collections

BLAST

Details

License:: MIT
Maturity:: Mature
Cost:: Free of charge
Tool Type:: web application
Added:: 11/4/2024
Last Updated:: 11/7/2024

Operations

Sequence alignment
Sequence annotation

Data Inputs & Outputs

Sequence alignment

Inputs

Mass spectrometry data
- mzIdentML

Outputs

Image
- Database hits (sequence) format

Links

Repository

https://github.com/peterjc/galaxy_blast

Issue tracker

https://github.com/peterjc/galaxy_blast/issues

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