BodyMapR

BodyMapR maps clinical tumor characteristics (CTC) from structured real-world data sources such as REDCap® onto anatomical diagrams to visualize cancer lesion distributions for oncological research.


Key Features:

  • Integration with Structured Data: Transposes structured RWD from sources such as REDCap® into an anatomical mapping framework for downstream analysis.
  • Interactive Visualization: Produces dynamic anatomical visualizations that display spatial distributions and attributes of cancer lesions and CTCs.
  • R-based Implementation: Implemented as an R package to integrate with R-based analysis workflows and scripting environments.

Scientific Applications:

  • Spatial lesion mapping: Visualizes the anatomical distribution of cancer lesions to support spatial analyses of tumor occurrence.
  • Pattern and correlation discovery: Reveals spatial patterns and correlations among clinical tumor characteristics across anatomical sites.
  • Natural history and clinical research: Supports studies of cancer natural history and research questions that require anatomically contextualized CTC data.

Methodology:

Structured data from REDCap® and other RWD sources are integrated into an anatomical framework using R programming; a Shiny application component provides real-time interactive access to the visualized data.

Topics

Details

License:
MIT
Cost:
Free of charge
Tool Type:
library
Operating Systems:
Mac, Linux, Windows
Programming Languages:
R
Added:
6/22/2022
Last Updated:
6/22/2022

Operations

Publications

Miller DM, Shalhout SZ. BodyMapR: an R package and Shiny application designed to generate anatomical visualizations of cancer lesions. JAMIA Open. 2022;5(1). doi:10.1093/jamiaopen/ooac013. PMID:35274087. PMCID:PMC8903180.