BodyMapR
BodyMapR maps clinical tumor characteristics (CTC) from structured real-world data sources such as REDCap® onto anatomical diagrams to visualize cancer lesion distributions for oncological research.
Key Features:
- Integration with Structured Data: Transposes structured RWD from sources such as REDCap® into an anatomical mapping framework for downstream analysis.
- Interactive Visualization: Produces dynamic anatomical visualizations that display spatial distributions and attributes of cancer lesions and CTCs.
- R-based Implementation: Implemented as an R package to integrate with R-based analysis workflows and scripting environments.
Scientific Applications:
- Spatial lesion mapping: Visualizes the anatomical distribution of cancer lesions to support spatial analyses of tumor occurrence.
- Pattern and correlation discovery: Reveals spatial patterns and correlations among clinical tumor characteristics across anatomical sites.
- Natural history and clinical research: Supports studies of cancer natural history and research questions that require anatomically contextualized CTC data.
Methodology:
Structured data from REDCap® and other RWD sources are integrated into an anatomical framework using R programming; a Shiny application component provides real-time interactive access to the visualized data.
Topics
Details
- License:
- MIT
- Cost:
- Free of charge
- Tool Type:
- library
- Operating Systems:
- Mac, Linux, Windows
- Programming Languages:
- R
- Added:
- 6/22/2022
- Last Updated:
- 6/22/2022
Operations
Publications
Miller DM, Shalhout SZ. BodyMapR: an R package and Shiny application designed to generate anatomical visualizations of cancer lesions. JAMIA Open. 2022;5(1). doi:10.1093/jamiaopen/ooac013. PMID:35274087. PMCID:PMC8903180.