BoNesis

Synthesis of Most Permissive Boolean Networks from network architecture and dynamical properties

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Topics

Oncology Cell biology Molecular interactions, pathways and networks

Collections

PerMedCoE

Details

License:: CECILL-2.1
Cost:: Free of charge
Tool Type:: command-line tool
Operating Systems:: Mac, Linux, Windows
Programming Languages:: Python
Added:: 4/28/2022
Last Updated:: 11/24/2024

Operations

Aggregation
Essential dynamics
Modelling and simulation
Network analysis

Publications

Chevalier S, Noël V, Calzone L, Zinovyev A, Paulevé L. Synthesis and Simulation of Ensembles of Boolean Networks for Cell Fate Decision. Lecture Notes in Computer Science. 2020. doi:10.1007/978-3-030-60327-4_11.

DOI: 10.1007/978-3-030-60327-4_11

Downloads

Source code
https://github.com/bioasp/bonesis

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