BOVIDS
BOVIDS employs deep learning to identify and classify nocturnal behavioral poses in African ungulates from video and image data to enable quantitative analysis of nocturnal activity patterns.
Key Features:
- Pose estimation: Identifies three behavioral poses — "Standing", "Lying-head up", and "Lying-head down".
- Classification accuracy: Achieves 99.4% accuracy for the specified pose classes.
- Data processing scale: Applied to over 11,411 hours of video footage in the described case study.
- Case study dataset: Analyzed observations from 25 common elands (Tragelaphus oryx) across five EAZA zoos covering 822 nights.
- Analytical outputs: Produces quantitative estimates of nocturnal activity budgets, phase lengths, and number of phases per behavioral state.
Scientific Applications:
- Nocturnal behavior quantification: Enables detailed description of nightly behavior in common elands and other African ungulates from video material.
- Comparative demographic analysis: Supports analyses of age- and sex-dependent differences in nocturnal activity budgets, phase lengths, and phase counts.
- Sleep posture analysis: Detects differences in time spent in REM sleep posture between males and females and across age classes.
- Behavioral rhythm detection: Facilitates identification of rhythmic patterns between Standing and Lying phases relevant to behavioral ecology.
- Welfare and husbandry assessment: Provides quantitative data to inform animal welfare assessments and optimization of husbandry conditions.
Methodology:
BOVIDS employs deep learning algorithms to automate the identification and classification of behavioral poses from video and image data.
Topics
Details
- License:
- GPL-3.0
- Cost:
- Free of charge
- Tool Type:
- workflow
- Operating Systems:
- Mac, Linux, Windows
- Programming Languages:
- Python
- Added:
- 3/29/2022
- Last Updated:
- 3/29/2022
Operations
Data Inputs & Outputs
Phasing
Inputs
Outputs
Publications
Gübert J, Hahn‐Klimroth M, Dierkes PW. BOVIDS: A deep learning‐based software package for pose estimation to evaluate nightly behavior and its application to common elands (<i>Tragelaphus oryx</i>) in zoos. Ecology and Evolution. 2022;12(3). doi:10.1002/ece3.8701. PMID:35342615. PMCID:PMC8928879.
Links
Repository
https://zenodo.org/record/6143896