BRAIN

BRAIN calculates aggregated isotopic distributions and exact center-masses for chemical substances, focusing on isotopes of Carbon (C), Hydrogen (H), Nitrogen (N), Oxygen (O), and Sulfur (S).


Key Features:

  • Polynomial Method: Implements a polynomial method based on the Newton-Girard theorem and Viète's formulae to encode aggregated isotopic variants.
  • Recursive Equation: Derives and applies a recursive equation to compute occurrence probabilities of consecutive isotopic peaks.
  • Center-Mass Calculation: Computes exact center-masses of isotopic variants.
  • High Throughput and Customizability: Supports high-throughput computation and parameter customizability for mass spectral data analysis.

Scientific Applications:

  • Protein Research: Analyzes protein isotopic distributions.
  • Lipidomics and Metabolomics: Applies to lipid and metabolite isotopic composition analyses.
  • Glycoscience: Supports isotopic analysis of glycans and related compounds.
  • Space Exploration: Enables precise isotopic measurements relevant to space exploration studies.

Methodology:

Uses a polynomial method based on the Newton-Girard theorem and Viète's formulae, employs a recursive equation to compute occurrence probabilities of consecutive isotopic peaks, and calculates center-masses for aggregated isotopic distributions of C, H, N, O, and S.

Topics

Collections

Details

License:
GPL-2.0
Tool Type:
command-line tool, library
Operating Systems:
Linux, Windows, Mac
Programming Languages:
R
Added:
1/17/2017
Last Updated:
4/15/2021

Operations

Publications

Dittwald P, Claesen J, Burzykowski T, Valkenborg D, Gambin A. BRAIN: A Universal Tool for High-Throughput Calculations of the Isotopic Distribution for Mass Spectrometry. Analytical Chemistry. 2013;85(4):1991-1994. doi:10.1021/ac303439m.

Documentation

Downloads

Related Tools

biostrings
Relation: uses