BRAIN
BRAIN calculates aggregated isotopic distributions and exact center-masses for chemical substances, focusing on isotopes of Carbon (C), Hydrogen (H), Nitrogen (N), Oxygen (O), and Sulfur (S).
Key Features:
- Polynomial Method: Implements a polynomial method based on the Newton-Girard theorem and Viète's formulae to encode aggregated isotopic variants.
- Recursive Equation: Derives and applies a recursive equation to compute occurrence probabilities of consecutive isotopic peaks.
- Center-Mass Calculation: Computes exact center-masses of isotopic variants.
- High Throughput and Customizability: Supports high-throughput computation and parameter customizability for mass spectral data analysis.
Scientific Applications:
- Protein Research: Analyzes protein isotopic distributions.
- Lipidomics and Metabolomics: Applies to lipid and metabolite isotopic composition analyses.
- Glycoscience: Supports isotopic analysis of glycans and related compounds.
- Space Exploration: Enables precise isotopic measurements relevant to space exploration studies.
Methodology:
Uses a polynomial method based on the Newton-Girard theorem and Viète's formulae, employs a recursive equation to compute occurrence probabilities of consecutive isotopic peaks, and calculates center-masses for aggregated isotopic distributions of C, H, N, O, and S.
Topics
Collections
Details
- License:
- GPL-2.0
- Tool Type:
- command-line tool, library
- Operating Systems:
- Linux, Windows, Mac
- Programming Languages:
- R
- Added:
- 1/17/2017
- Last Updated:
- 4/15/2021
Operations
Publications
Dittwald P, Claesen J, Burzykowski T, Valkenborg D, Gambin A. BRAIN: A Universal Tool for High-Throughput Calculations of the Isotopic Distribution for Mass Spectrometry. Analytical Chemistry. 2013;85(4):1991-1994. doi:10.1021/ac303439m.
DOI: 10.1021/ac303439m
Documentation
Downloads
Related Tools
biostrings
Relation: uses