BRANCHSNV

BRANCHSNV reports strict clade-exclusive nucleotide markers separately from nucleotide substitutions reconstructed on a selected edge of a rooted phylogenetic tree using equal-cost Sankoff parsimony, while retaining ambiguity across globally optimal reconstructions. It supports conventional and transposed nucleotide NEXUS matrices and produces deterministic, provenance-aware outputs.

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Topics

Genomics Phylogenetics Phylogenomics

Details

License:: MIT
Maturity:: Emerging
Cost:: Free of charge
Tool Type:: command-line tool
Operating Systems:: Linux, Mac, Windows
Programming Languages:: Python
Added:: 8/14/2026
Last Updated:: 10/7/2026

Operations

Phylogenetic analysis

Data Inputs & Outputs

Phylogenetic analysis

Inputs

Outputs

Sequence variations
- TSV

Documentation

Citation instructions

https://branchsnv.readthedocs.io/en/latest/

FAQ

https://branchsnv.readthedocs.io/en/latest/

Downloads

Downloads page
https://github.com/RhysWhite/branchsnv/releases
Software package
Version: 0.2.0
https://anaconda.org/bioconda/branchsnv
Bioconda package
Software package
Version: 0.2.0
https://pypi.org/project/branchsnv/

Links

Issue tracker

https://github.com/RhysWhite/branchsnv/issues

Other

https://github.com/RhysWhite/branchsnv-validation

Repository

https://github.com/RhysWhite/branchsnv

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