brea

brea implements a Bayesian discrete-time proportional hazards framework for analyzing recurrent discrete-time event data, enabling semiparametric modeling of time-varying covariates and MCMC-based inference for interval-recorded events such as patient-reported outcomes recorded in whole months.


Key Features:

  • Bayesian discrete-time proportional hazards: Implements a Bayesian discrete-time proportional hazards model for recurrent events, supporting competing risks, frailties (random effects), and tied outcomes.
  • Flexible baseline hazards: Allows flexible specification of baseline hazards to capture complex time effects without restrictive parametric forms.
  • Semiparametric covariate modeling: Employs a generalized additive model (GAM)-style semiparametric approach to incorporate time-varying covariates.
  • MCMC-based inference: Uses Markov chain Monte Carlo (MCMC) algorithms for parameter estimation and uncertainty quantification.

Scientific Applications:

  • Epidemiology and clinical research: Applied to studies with discrete-time recurrent events such as patient-reported outcomes and other interval-recorded event data.
  • Illicit drug use cessation: Used to analyze time to cessation recorded in whole months, accommodating tied outcomes and recurrent events.
  • Clinical trials (anesthesia methods): Applied in trial settings involving anesthesia administration methods where recurrent and interval-recorded events and random effects are relevant.

Methodology:

Uses a Bayesian discrete-time proportional hazards model tailored for recurrent event data with semiparametric GAM-style covariate terms, flexible baseline hazard specification, explicit handling of competing risks and frailties, and inference via Markov chain Monte Carlo (MCMC).

Topics

Details

Programming Languages:
R
Added:
11/14/2019
Last Updated:
11/24/2024

Operations

Publications

King AJ, Weiss RE. A general semiparametric Bayesian discrete-time recurrent events model. Biostatistics. 2019;22(2):266-282. doi:10.1093/biostatistics/kxz029. PMID:31373358. PMCID:PMC8546916.

PMID: 31373358
PMCID: PMC8546916
Funding: - The Center for HIV Identification, Prevention, and Treatment (CHIPTS) National Institute of Mental Health: P30MH058107 - UCLA Center for AIDS Research: 5P30AI028697