bwimage
bwimage analyzes black-and-white images in R to quantify spatial patterns of natural structures for ecological and biological research.
Key Features:
- R implementation: Implemented as an R package providing functions for analysis of binary (black-and-white) images.
- Pattern analysis functions: Implements established functions documented in the literature to describe intricate spatial patterns in images.
- Aggregation index: Introduces an aggregation index metric to quantify spatial clustering and density within binary images.
- Vegetation and canopy metrics: Calculates canopy openness and descriptors of vertical vegetation structure from binary images.
- Nest architecture analysis: Provides measures applicable to analysis of bird nest structures from black-and-white images.
- Image acquisition guidance: Emphasizes and provides guidance on producing high-quality digital images for accurate binary image analysis.
Scientific Applications:
- Ecological research: Enables quantification of canopy openness and vertical vegetation structure for studies of forest dynamics and plant ecology.
- Ornithology: Supports analysis of bird nest architecture to study nesting behavior and habitat preferences.
- Pattern quantification in natural structures: Facilitates description and comparison of spatial patterns in various natural objects using binary image metrics.
Methodology:
Implements established pattern-analysis functions in R applied to binary (black-and-white) images and computes metrics including the aggregation index.
Topics
Details
- License:
- GPL-2.0
- Programming Languages:
- R
- Added:
- 1/9/2020
- Last Updated:
- 12/9/2020
Operations
Publications
Biagolini-Jr. C, Macedo RH. bwimage: A package to describe image patterns in natural structures. F1000Research. 2019;8:1168. doi:10.12688/f1000research.19801.2.
Links
Repository
https://github.com/biagolini/bwimage