bwimage

bwimage analyzes black-and-white images in R to quantify spatial patterns of natural structures for ecological and biological research.


Key Features:

  • R implementation: Implemented as an R package providing functions for analysis of binary (black-and-white) images.
  • Pattern analysis functions: Implements established functions documented in the literature to describe intricate spatial patterns in images.
  • Aggregation index: Introduces an aggregation index metric to quantify spatial clustering and density within binary images.
  • Vegetation and canopy metrics: Calculates canopy openness and descriptors of vertical vegetation structure from binary images.
  • Nest architecture analysis: Provides measures applicable to analysis of bird nest structures from black-and-white images.
  • Image acquisition guidance: Emphasizes and provides guidance on producing high-quality digital images for accurate binary image analysis.

Scientific Applications:

  • Ecological research: Enables quantification of canopy openness and vertical vegetation structure for studies of forest dynamics and plant ecology.
  • Ornithology: Supports analysis of bird nest architecture to study nesting behavior and habitat preferences.
  • Pattern quantification in natural structures: Facilitates description and comparison of spatial patterns in various natural objects using binary image metrics.

Methodology:

Implements established pattern-analysis functions in R applied to binary (black-and-white) images and computes metrics including the aggregation index.

Topics

Details

License:
GPL-2.0
Programming Languages:
R
Added:
1/9/2020
Last Updated:
12/9/2020

Operations

Publications

Biagolini-Jr. C, Macedo RH. bwimage: A package to describe image patterns in natural structures. F1000Research. 2019;8:1168. doi:10.12688/f1000research.19801.2.

Links