CADRE Genomes Browser
CADRE Genomes Browser provides curated genomic sequences and annotations for Aspergillus species, including the human pathogen Aspergillus fumigatus, to support comparative and functional genomics.
Key Features:
- Comprehensive Genomic Data: Provides access to annotated sequences for eight species of Aspergillus.
- Search, Visualization, and Analysis: Supports searching, visualization, and analysis of genomic features.
- Genome Comparison Data: Includes genome comparison data for evolutionary and functional analyses.
- Integration with High-throughput Data: Integrates high-throughput sequencing data to enhance annotation processes.
- Scalable Database and Software Infrastructure: Employs upgraded database infrastructure and software capabilities to manage increasingly complex datasets.
Scientific Applications:
- Medical Mycology Research: Supports research into Aspergillus species as human pathogens, notably Aspergillus fumigatus.
- Comparative and Functional Genomics: Enables comparative genomics studies to investigate evolutionary relationships and gene function within the genus.
Methodology:
Manages sequencing-derived genomic data through upgraded database infrastructure and software capabilities and integrates high-throughput data to enhance annotation processes.
Topics
Details
- Tool Type:
- web application
- Operating Systems:
- Linux, Windows, Mac
- Added:
- 3/30/2017
- Last Updated:
- 11/25/2024
Operations
Publications
Mabey Gilsenan J, Cooley J, Bowyer P. CADRE: the Central Aspergillus Data REpository 2012. Nucleic Acids Research. 2011;40(D1):D660-D666. doi:10.1093/nar/gkr971. PMID:22080563. PMCID:PMC3245145.