CADRE Genomes Browser

CADRE Genomes Browser provides curated genomic sequences and annotations for Aspergillus species, including the human pathogen Aspergillus fumigatus, to support comparative and functional genomics.


Key Features:

  • Comprehensive Genomic Data: Provides access to annotated sequences for eight species of Aspergillus.
  • Search, Visualization, and Analysis: Supports searching, visualization, and analysis of genomic features.
  • Genome Comparison Data: Includes genome comparison data for evolutionary and functional analyses.
  • Integration with High-throughput Data: Integrates high-throughput sequencing data to enhance annotation processes.
  • Scalable Database and Software Infrastructure: Employs upgraded database infrastructure and software capabilities to manage increasingly complex datasets.

Scientific Applications:

  • Medical Mycology Research: Supports research into Aspergillus species as human pathogens, notably Aspergillus fumigatus.
  • Comparative and Functional Genomics: Enables comparative genomics studies to investigate evolutionary relationships and gene function within the genus.

Methodology:

Manages sequencing-derived genomic data through upgraded database infrastructure and software capabilities and integrates high-throughput data to enhance annotation processes.

Topics

Details

Tool Type:
web application
Operating Systems:
Linux, Windows, Mac
Added:
3/30/2017
Last Updated:
11/25/2024

Operations

Publications

Mabey Gilsenan J, Cooley J, Bowyer P. CADRE: the Central Aspergillus Data REpository 2012. Nucleic Acids Research. 2011;40(D1):D660-D666. doi:10.1093/nar/gkr971. PMID:22080563. PMCID:PMC3245145.

Documentation