CafeteriaSA corpus

CafeteriaSA corpus provides a manually annotated corpus of 500 scientific abstracts with 6,407 Hansard taxonomy, 4,299 FoodOn, and 3,623 SNOMED-CT food-entity annotations to support NLP extraction and semantic mapping of food-related information.


Key Features:

  • Corpus size: 500 scientific abstracts annotated for food entities.
  • Annotation counts: 6,407 annotations mapped to the Hansard taxonomy, 4,299 to FoodOn, and 3,623 to SNOMED-CT.
  • Vocabularies: Annotations explicitly reference three biomedical vocabularies: Hansard taxonomy, FoodOn, and SNOMED-CT.
  • Entity focus: Annotations target food-related entities extracted from scientific literature.
  • Multi-vocabulary mapping: Food-entity annotations are aligned across multiple semantic frameworks to enable cross-ontology analyses.
  • Intended analytical use: Prepared to facilitate development and evaluation of natural language processing methods for food information extraction.
  • Relevant domains: Coverage intended for applications in health informatics, nutrition science, and environmental health research.

Scientific Applications:

  • NLP model development: Support training and evaluation of NLP models for entity recognition and semantic linking of food items.
  • Health informatics and nutrition research: Enable integration of food-entity data into studies in nutrition science and health informatics.
  • Environmental and public health analysis: Provide annotated data for analyses of food-related factors in environmental and public health contexts.
  • Predictive modeling: Furnish semantically enriched inputs for predictive modeling that require accurate food entity representations.

Methodology:

Manual curation and annotation of food entities in 500 scientific abstracts with mappings to Hansard taxonomy, FoodOn, and SNOMED-CT.

Topics

Details

License:
CC-BY-4.0
Tool Type:
web application
Operating Systems:
Mac, Linux, Windows
Added:
2/12/2023
Last Updated:
11/24/2024

Operations

Publications

Cenikj G, Valenčič E, Ispirova G, Ogrinc M, Stojanov R, Korošec P, Cavalli E, Seljak BK, Eftimov T. CafeteriaSA corpus: scientific abstracts annotated across different food semantic resources. Database. 2022;2022. doi:10.1093/database/baac107. PMID:36526439. PMCID:PMC9757992.

PMID: 36526439
PMCID: PMC9757992
Funding: - Horizon 2020 Framework Programme: 101005259, 863059 - European Food Safety Authority: GP/EFSA/AMU/2020/03/LOT2 - Ad Futura Scholarship: Awarded to G.C. - Javna Agencija za Raziskovalno Dejavnost RS: P2-0098

Links