CafeteriaSA corpus
CafeteriaSA corpus provides a manually annotated corpus of 500 scientific abstracts with 6,407 Hansard taxonomy, 4,299 FoodOn, and 3,623 SNOMED-CT food-entity annotations to support NLP extraction and semantic mapping of food-related information.
Key Features:
- Corpus size: 500 scientific abstracts annotated for food entities.
- Annotation counts: 6,407 annotations mapped to the Hansard taxonomy, 4,299 to FoodOn, and 3,623 to SNOMED-CT.
- Vocabularies: Annotations explicitly reference three biomedical vocabularies: Hansard taxonomy, FoodOn, and SNOMED-CT.
- Entity focus: Annotations target food-related entities extracted from scientific literature.
- Multi-vocabulary mapping: Food-entity annotations are aligned across multiple semantic frameworks to enable cross-ontology analyses.
- Intended analytical use: Prepared to facilitate development and evaluation of natural language processing methods for food information extraction.
- Relevant domains: Coverage intended for applications in health informatics, nutrition science, and environmental health research.
Scientific Applications:
- NLP model development: Support training and evaluation of NLP models for entity recognition and semantic linking of food items.
- Health informatics and nutrition research: Enable integration of food-entity data into studies in nutrition science and health informatics.
- Environmental and public health analysis: Provide annotated data for analyses of food-related factors in environmental and public health contexts.
- Predictive modeling: Furnish semantically enriched inputs for predictive modeling that require accurate food entity representations.
Methodology:
Manual curation and annotation of food entities in 500 scientific abstracts with mappings to Hansard taxonomy, FoodOn, and SNOMED-CT.
Topics
Details
- License:
- CC-BY-4.0
- Tool Type:
- web application
- Operating Systems:
- Mac, Linux, Windows
- Added:
- 2/12/2023
- Last Updated:
- 11/24/2024
Operations
Publications
Cenikj G, Valenčič E, Ispirova G, Ogrinc M, Stojanov R, Korošec P, Cavalli E, Seljak BK, Eftimov T. CafeteriaSA corpus: scientific abstracts annotated across different food semantic resources. Database. 2022;2022. doi:10.1093/database/baac107. PMID:36526439. PMCID:PMC9757992.
PMID: 36526439
PMCID: PMC9757992
Funding: - Horizon 2020 Framework Programme: 101005259, 863059
- European Food Safety Authority: GP/EFSA/AMU/2020/03/LOT2
- Ad Futura Scholarship: Awarded to G.C.
- Javna Agencija za Raziskovalno Dejavnost RS: P2-0098