The Ca2+ genome database
The Ca2+ genome database maps genes involved in calcium (Ca2+) signaling pathways and links them to human genetic disorders to support analysis of Ca2+-related molecular mechanisms.
Key Features:
- Extensive Gene Mapping: Identifies 1805 genes that act as regulators or targets within intracellular Ca2+ signaling pathways, curated using Gene Ontology terms and genome databases.
- Linkage to Genetic Disorders: Associates the 1805 Ca2+ genes with 1470 human genetic disorders and reported mutations within Ca2+ genes.
- Network Analysis: Reveals a network with scale-free properties when mapping Ca2+ genes to their associated genetic disorders.
Scientific Applications:
- Gene Function Studies: Enables investigation of specific roles of genes within Ca2+ signaling pathways.
- Genetic Disorder Research: Supports identification of genetic underpinnings of diseases by providing gene–disease associations and mutation data for Ca2+ genes.
- Network Biology: Allows analysis of scale-free network topology to examine robustness, vulnerability, and hub genes in Ca2+ signaling–disease networks.
Methodology:
Uses Gene Ontology terms and genome databases to identify and categorize genes involved in Ca2+ signaling and associates them with human genetic disorders.
Topics
Details
- Tool Type:
- web application
- Operating Systems:
- Linux, Windows, Mac
- Added:
- 6/7/2018
- Last Updated:
- 11/25/2024
Operations
Publications
Hörtenhuber M, Toledo EM, Smedler E, Arenas E, Malmersjö S, Louhivuori L, Uhlén P. Mapping genes for calcium signaling and their associated human genetic disorders. Bioinformatics. 2017;33(16):2547-2554. doi:10.1093/bioinformatics/btx225. PMID:28430858. PMCID:PMC5870714.
PMID: 28430858
PMCID: PMC5870714
Funding: - Swedish Research Council: 2009-3364, 2010-4392, 2013-3189 to PU
- Swedish Cancer Society: CAN 2013-802, CAN 2016-801 to PU
- Swedish Brain Foundation: FO2014-0220, FO2015-0074 to PU