The Ca2+ genome database

The Ca2+ genome database maps genes involved in calcium (Ca2+) signaling pathways and links them to human genetic disorders to support analysis of Ca2+-related molecular mechanisms.


Key Features:

  • Extensive Gene Mapping: Identifies 1805 genes that act as regulators or targets within intracellular Ca2+ signaling pathways, curated using Gene Ontology terms and genome databases.
  • Linkage to Genetic Disorders: Associates the 1805 Ca2+ genes with 1470 human genetic disorders and reported mutations within Ca2+ genes.
  • Network Analysis: Reveals a network with scale-free properties when mapping Ca2+ genes to their associated genetic disorders.

Scientific Applications:

  • Gene Function Studies: Enables investigation of specific roles of genes within Ca2+ signaling pathways.
  • Genetic Disorder Research: Supports identification of genetic underpinnings of diseases by providing gene–disease associations and mutation data for Ca2+ genes.
  • Network Biology: Allows analysis of scale-free network topology to examine robustness, vulnerability, and hub genes in Ca2+ signaling–disease networks.

Methodology:

Uses Gene Ontology terms and genome databases to identify and categorize genes involved in Ca2+ signaling and associates them with human genetic disorders.

Topics

Details

Tool Type:
web application
Operating Systems:
Linux, Windows, Mac
Added:
6/7/2018
Last Updated:
11/25/2024

Operations

Publications

Hörtenhuber M, Toledo EM, Smedler E, Arenas E, Malmersjö S, Louhivuori L, Uhlén P. Mapping genes for calcium signaling and their associated human genetic disorders. Bioinformatics. 2017;33(16):2547-2554. doi:10.1093/bioinformatics/btx225. PMID:28430858. PMCID:PMC5870714.

PMID: 28430858
PMCID: PMC5870714
Funding: - Swedish Research Council: 2009-3364, 2010-4392, 2013-3189 to PU - Swedish Cancer Society: CAN 2013-802, CAN 2016-801 to PU - Swedish Brain Foundation: FO2014-0220, FO2015-0074 to PU

Documentation