CAID Prediction Portal

CAID Prediction Portal provides standardized execution and comparison of intrinsic disorder (ID) and binding-region prediction methods on protein sequences to support evaluation and identification of high-confidence disordered regions.


Key Features:

  • Intrinsic disorder and binding-region prediction: Predicts intrinsic disorder (ID) and protein binding regions by executing CAID prediction methods on protein sequences.
  • Comprehensive CAID method execution: Executes all available CAID methods on user-defined protein sequences.
  • Standardized outputs: Generates standardized outputs that facilitate direct comparison between different predictors.
  • Consensus predictions: Computes consensus predictions to highlight high-confidence intrinsic disorder regions.
  • Community-driven blind assessment: Operates as part of the Critical Assessment of protein Intrinsic Disorder (CAID) community-driven blind-test within a standardized computing environment.

Scientific Applications:

  • Benchmarking of predictors: Enables objective benchmarking and performance comparison of intrinsic disorder and binding-region prediction methods.
  • Protein annotation: Supports annotation of protein sequences with predicted intrinsic disorder and binding regions to identify potential functional disordered segments.
  • Community evaluation: Supports community-driven blind evaluation of prediction methods through the CAID initiative.
  • Biological interpretation: Aids interpretation of ID's role in biological processes by providing standardized and consensus predictions.

Methodology:

Runs all available CAID prediction methods on input protein sequences, generates standardized outputs for direct comparison, and computes consensus predictions to identify high-confidence intrinsic disorder regions as part of the CAID blind-test in a standardized computing environment.

Topics

Details

Cost:
Free of charge
Tool Type:
web application
Operating Systems:
Mac, Linux, Windows
Added:
1/2/2024
Last Updated:
11/24/2024

Operations

Publications

Del Conte A, Bouhraoua A, Mehdiabadi M, Clementel D, Monzon AM, Holehouse AS, Griffith D, Emenecker RJ, Patil A, Sharma R, Tsunoda T, Sharma A, Tang YJ, Liu B, Mirabello C, Wallner B, Rost B, Ilzhöfer D, Littmann M, Heinzinger M, Krautheimer LIM, Bernhofer M, McGuffin LJ, Callebaut I, Feildel TB, Liu J, Cheng J, Guo Z, Xu J, Wang S, Malhis N, Gsponer J, Kim C, Han K, Ma M, Kurgan L, Ghadermarzi S, Katuwawala A, Zhao B, Peng Z, Wu Z, Hu G, Wang K, Hoque MT, Kabir MWU, Vendruscolo M, Sormanni P, Li M, Zhang F, Jia P, Wang Y, Lobanov MY, Galzitskaya OV, Vranken W, Díaz A, Litfin T, Zhou Y, Hanson J, Paliwal K, Dosztányi Z, Erdős G, Tosatto SCE, Piovesan D. CAID prediction portal: a comprehensive service for predicting intrinsic disorder and binding regions in proteins. Nucleic Acids Research. 2023;51(W1):W62-W69. doi:10.1093/nar/gkad430. PMID:37246642. PMCID:PMC10320102.

PMID: 37246642
Funding: - MSCA-RISE: 778 247, 823 886, 952 334 - ELIXIR, the research infrastructure for life-science data; COST Action ML4NGP: CA21160 - MIUR: 2017483NH8

Documentation

Links