CAPTVRED

CAPTVRED assesses the virome present in complex samples obtained by Target Enrichment Sequencing or capture-based metagenomics, with particular focus on environmental matrices.

Key Features:

• Capture panel customization: A setup module allows preparation and adjustment of the pipeline to any capture panel directed to a set of species of interest.
• Virome description: Provides total or partial virome description from complex environmental samples.
• Reproducible results: Generates comprehensive and reproducible results.

Scientific Applications:

• Viral tracking: Tracks viral species from environmental datasets obtained by capture-based metagenomics.
• Viral discovery: Enables discovery of viruses in complex environmental samples using Target Enrichment Sequencing data.
• Virome characterization: Describes the virome composition in environmental matrices targeted by specific capture panels.

Methodology:

The sources do not explicitly detail the computational steps or methods used in the pipeline.