CardiSort
CardiSort classifies cardiac magnetic resonance (MR) images using a convolutional neural network to automate sorting by sequence type and imaging plane across multiple vendors.
Key Features:
- Multivendor compatibility: Trained on data from diverse sources including four centers and three different vendors to improve cross-vendor robustness.
- Dual-head architecture: A two-head CNN simultaneously classifies images by sequence type (17 types) and imaging plane (10 planes).
- Single Vendor Training (SVT): Trained on single-center data comprising 234 patients with sequence/plane/overall accuracy of 85.2%/93.2%/81.8% and F1-score 0.82.
- Multivendor Training (MVT): Trained on multicenter data from 434 patients across three centers with sequence/plane/overall accuracy of 96.1%/97.9%/94.3% and F1-score 0.94.
- External validation: MVT was validated on images from three previously unseen magnet systems from two vendors (80 patients) with sequence/plane/combined accuracy of 92.7%/93.0%/86.6% and F1-score 0.86.
Scientific Applications:
- Automated sequence selection for post-processing: Automates the initial sequence selection step in clinical post-processing pipelines for cardiac MR studies.
- Development of fully automated post-processing systems: Serves as a component for building end-to-end automated cardiac MR post-processing workflows.
- Cross-vendor generalizability assessment: Enables evaluation of model performance and generalizability across different magnet systems and vendors.
- Identification of underrepresented classes: Highlights limitations for underrepresented or highly variable sequences (e.g., perfusion imaging) to guide targeted dataset augmentation or refinement.
Methodology:
Retrospective multi-center cardiac MRI datasets were collected and a convolutional neural network with a dual-head architecture was trained and validated using expert radiologist ground-truth labels, including external validation on unseen magnet systems.
Topics
Details
- License:
- CC-BY-1.0
- Tool Type:
- workflow
- Programming Languages:
- Python
- Added:
- 7/17/2022
- Last Updated:
- 7/17/2022
Operations
Data Inputs & Outputs
Publications
Lim RP, Kachel S, Villa ADM, Kearney L, Bettencourt N, Young AA, Chiribiri A, Scannell CM. CardiSort: a convolutional neural network for cross vendor automated sorting of cardiac MR images. European Radiology. 2022;32(9):5907-5920. doi:10.1007/s00330-022-08724-4. PMID:35368227. PMCID:PMC9381634.