CASP
CASP analyzes comet assay images from single-cell gel electrophoresis to quantify DNA strand breaks for genotoxicity assessment and DNA repair kinetics studies.
Key Features:
- Automated image analysis: Identifies and quantifies comet-shaped patterns to determine the extent of DNA strand breaks.
- Image format compatibility: Processes color and grayscale images of fluorescence-stained comets saved in TIF format.
- Negative image conversion: Supports negative conversion for silver-stained images with dark cells on a white background.
- Validation: Produced reproducible results in experiments using human lymphocytes exposed to gamma-rays.
- Platform compatibility: Operates on multiple platforms and has been tested on Windows 95 and Linux.
Scientific Applications:
- Genotoxicity and cytotoxicity assessment: Evaluation of the effects of chemical compounds, radiation, or other stressors on cellular DNA.
- DNA repair kinetics: Monitoring the kinetics of DNA repair processes following exposure to damaging agents.
- Comparative analysis: Conducting comparative analyses across different experimental conditions or treatments.
Methodology:
Automated image analysis that identifies and quantifies comet-shaped patterns formed by damaged cells to determine the extent of DNA strand breaks.
Topics
Details
- Tool Type:
- desktop application
- Operating Systems:
- Linux, Windows
- Programming Languages:
- C++
- Added:
- 8/3/2017
- Last Updated:
- 11/25/2024
Operations
Publications
Końca K, Lankoff A, Banasik A, Lisowska H, Kuszewski T, Góźdź S, Koza Z, Wojcik A. A cross-platform public domain PC image-analysis program for the comet assay. Mutation Research/Genetic Toxicology and Environmental Mutagenesis. 2003;534(1-2):15-20. doi:10.1016/s1383-5718(02)00251-6. PMID:12504751.
PMID: 12504751