CASP

CASP analyzes comet assay images from single-cell gel electrophoresis to quantify DNA strand breaks for genotoxicity assessment and DNA repair kinetics studies.


Key Features:

  • Automated image analysis: Identifies and quantifies comet-shaped patterns to determine the extent of DNA strand breaks.
  • Image format compatibility: Processes color and grayscale images of fluorescence-stained comets saved in TIF format.
  • Negative image conversion: Supports negative conversion for silver-stained images with dark cells on a white background.
  • Validation: Produced reproducible results in experiments using human lymphocytes exposed to gamma-rays.
  • Platform compatibility: Operates on multiple platforms and has been tested on Windows 95 and Linux.

Scientific Applications:

  • Genotoxicity and cytotoxicity assessment: Evaluation of the effects of chemical compounds, radiation, or other stressors on cellular DNA.
  • DNA repair kinetics: Monitoring the kinetics of DNA repair processes following exposure to damaging agents.
  • Comparative analysis: Conducting comparative analyses across different experimental conditions or treatments.

Methodology:

Automated image analysis that identifies and quantifies comet-shaped patterns formed by damaged cells to determine the extent of DNA strand breaks.

Topics

Details

Tool Type:
desktop application
Operating Systems:
Linux, Windows
Programming Languages:
C++
Added:
8/3/2017
Last Updated:
11/25/2024

Operations

Publications

Końca K, Lankoff A, Banasik A, Lisowska H, Kuszewski T, Góźdź S, Koza Z, Wojcik A. A cross-platform public domain PC image-analysis program for the comet assay. Mutation Research/Genetic Toxicology and Environmental Mutagenesis. 2003;534(1-2):15-20. doi:10.1016/s1383-5718(02)00251-6. PMID:12504751.

Documentation

Links