Category
Category performs categoric analysis within the Bioconductor framework using R to analyze categorical data from high-throughput genomic and molecular biology experiments.
Key Features:
- Implementation: Implemented in the R programming language and distributed as part of the Bioconductor project.
- Analytical focus: Performs categoric analysis on categorical data types encountered in genomic and molecular biology studies.
- Interoperability: Interoperates with other Bioconductor packages to enable combined analysis workflows.
- Quality assurance: Subject to Bioconductor's formal initial review and continuous automated testing.
- Repository context: Provided as one component among Bioconductor's collection of packages.
Scientific Applications:
- Gene expression studies: Enables categoric analysis of categorical outcomes in gene expression experiments.
- Pathway analysis: Supports categorical analyses used in pathway-level investigations.
- High-throughput experiments: Applies categoric statistical methods to interpret results from high-throughput genomic and molecular biology experiments.
Methodology:
Implemented in R and leveraging R's statistical capabilities to perform categoric analyses.
Topics
Collections
Details
- License:
- Artistic-2.0
- Tool Type:
- command-line tool, library
- Operating Systems:
- Linux, Windows, Mac
- Programming Languages:
- R
- Added:
- 1/17/2017
- Last Updated:
- 11/25/2024
Operations
Data Inputs & Outputs
Statistical calculation
Publications
Huber W, Carey VJ, Gentleman R, Anders S, Carlson M, Carvalho BS, Bravo HC, Davis S, Gatto L, Girke T, Gottardo R, Hahne F, Hansen KD, Irizarry RA, Lawrence M, Love MI, MacDonald J, Obenchain V, Oleś AK, Pagès H, Reyes A, Shannon P, Smyth GK, Tenenbaum D, Waldron L, Morgan M. Orchestrating high-throughput genomic analysis with Bioconductor. Nature Methods. 2015;12(2):115-121. doi:10.1038/nmeth.3252. PMID:25633503. PMCID:PMC4509590.