CATS-rf

CATS-rf evaluates transcriptome assemblies using RNA-seq reads without requiring a reference genome

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Topics

Biology Biosciences Computational biology Omics

Details

License:: MIT
Maturity:: Mature
Cost:: Free of charge
Tool Type:: command-line tool
Operating Systems:: Linux, Mac
Programming Languages:: Bash, R
Added:: 9/3/2025
Last Updated:: 9/13/2025

Operations

Sequence assembly validation

Data Inputs & Outputs

Sequence assembly validation

Inputs

RNA sequence

Outputs

Statistical estimate score

Publications

DOI: 10.1101/2025.07.22.666112

Documentation

General

https://github.com/bodulic/CATS-rf

Downloads

Container file
Version: 1.0.2
https://hub.docker.com/repository/docker/bodulic/cats-rf
Software package
Version: 1.0.2
https://anaconda.org/bioconda/cats-rf
Source code
Version: 1.0.2
https://github.com/bodulic/CATS-rf

Links

Repository

https://github.com/bodulic/CATS-rf

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