CBPtools
CBPtools implements regional connectivity-based parcellation (rCBP) to identify structural and functional differentiation within regions of interest (ROIs) using resting-state functional connectivity and structural connectivity based on diffusion-weighted imaging.
Key Features:
- Modality Support: Supports resting-state functional connectivity and structural connectivity based on diffusion-weighted imaging.
- Custom Connectivity Input: Accepts custom connectivity matrices as input for tailored analyses.
- Parameter Customization: Provides customizable analysis parameters for adjustment to experimental requirements.
- Scalability and Parallelization: Leverages parallel processing environments to scale analyses to large datasets and multiple subjects.
- Output and Validation: Produces parcellation results with corresponding validity metrics in textual and graphical formats.
- Standardized rCBP Procedure: Implements a standardized rCBP workflow to promote reproducibility and comparability across studies.
Scientific Applications:
- Connectivity-based ROI parcellation: Identification of connectivity-driven subregions within prominent ROIs frequently studied in parcellation literature.
- Large-scale rCBP studies: Application to extensive datasets using average compute-cluster infrastructures for multi-subject analyses.
Methodology:
Implements a standardized regional connectivity-based parcellation (rCBP) procedure using input connectivity matrices, parallel processing for scalability, and computation of validity metrics.
Topics
Details
- License:
- Freeware
- Tool Type:
- command-line tool
- Programming Languages:
- Python
- Added:
- 1/18/2021
- Last Updated:
- 2/9/2021
Operations
Publications
Reuter N, Genon S, Kharabian Masouleh S, Hoffstaedter F, Liu X, Kalenscher T, Eickhoff SB, Patil KR. CBPtools: a Python package for regional connectivity-based parcellation. Brain Structure and Function. 2020;225(4):1261-1275. doi:10.1007/s00429-020-02046-1. PMID:32144496. PMCID:PMC7271019.