CBPtools

CBPtools implements regional connectivity-based parcellation (rCBP) to identify structural and functional differentiation within regions of interest (ROIs) using resting-state functional connectivity and structural connectivity based on diffusion-weighted imaging.


Key Features:

  • Modality Support: Supports resting-state functional connectivity and structural connectivity based on diffusion-weighted imaging.
  • Custom Connectivity Input: Accepts custom connectivity matrices as input for tailored analyses.
  • Parameter Customization: Provides customizable analysis parameters for adjustment to experimental requirements.
  • Scalability and Parallelization: Leverages parallel processing environments to scale analyses to large datasets and multiple subjects.
  • Output and Validation: Produces parcellation results with corresponding validity metrics in textual and graphical formats.
  • Standardized rCBP Procedure: Implements a standardized rCBP workflow to promote reproducibility and comparability across studies.

Scientific Applications:

  • Connectivity-based ROI parcellation: Identification of connectivity-driven subregions within prominent ROIs frequently studied in parcellation literature.
  • Large-scale rCBP studies: Application to extensive datasets using average compute-cluster infrastructures for multi-subject analyses.

Methodology:

Implements a standardized regional connectivity-based parcellation (rCBP) procedure using input connectivity matrices, parallel processing for scalability, and computation of validity metrics.

Topics

Details

License:
Freeware
Tool Type:
command-line tool
Programming Languages:
Python
Added:
1/18/2021
Last Updated:
2/9/2021

Operations

Publications

Reuter N, Genon S, Kharabian Masouleh S, Hoffstaedter F, Liu X, Kalenscher T, Eickhoff SB, Patil KR. CBPtools: a Python package for regional connectivity-based parcellation. Brain Structure and Function. 2020;225(4):1261-1275. doi:10.1007/s00429-020-02046-1. PMID:32144496. PMCID:PMC7271019.

PMID: 32144496
PMCID: PMC7271019
Funding: - Horizon 2020: 7202070, 785907 - Deutsche Forschungsgemeinschaft: GE 2835/1-1