CBS DAS protein viewer

CBS DAS protein viewer aggregates protein annotation data using the Distributed Annotation System (DAS) to compile layered annotations for specific protein sequences.


Key Features:

  • Integration of Multiple Data Sources: Uses the DAS protocol to aggregate annotation layers from diverse servers including the Center for Biological Sequence Analysis and the BioSapiens reference UniProt server at the European Bioinformatics Institute (EBI).
  • Layered Annotation Compilation: Compiles and present multiple annotation layers associated with a given protein sequence to provide a consolidated overview of features.
  • Scalability: New DAS data sources can be incorporated to expand the set of available annotations.

Scientific Applications:

  • Protein annotation aggregation: Consolidates disparate annotations to support interpretation of protein features.
  • Functional and structural feature analysis: Supports analysis of protein functions, interactions, and structural features via integrated annotation layers.
  • Molecular biology, genetics, and proteomics studies: Facilitates exploration of complex datasets relevant to molecular biology, genetics, and proteomics.

Methodology:

Operates via the Distributed Annotation System (DAS) by connecting to multiple annotation servers and dynamically fetching relevant annotation layers for a queried protein sequence.

Topics

Details

License:
Other
Maturity:
Mature
Cost:
Free of charge
Tool Type:
web application
Operating Systems:
Linux, Windows, Mac
Programming Languages:
JavaScript
Added:
2/10/2017
Last Updated:
11/24/2024

Operations

Publications

Olason PI. Integrating protein annotation resources through the Distributed Annotation System. Nucleic Acids Research. 2005;33(Web Server):W468-W470. doi:10.1093/nar/gki463. PMID:15980514. PMCID:PMC1160224.