CCDB
CCDB catalogs inter-chemical correlations across publicly available metabolomics and exposomics datasets to support interpretation of chemical relationships in human specimen data.
Key Features:
- Comprehensive catalogue: Compiles inter-chemical correlations from a collection of 35 high-quality human studies, including the National Health and Nutrition Examination Survey (NHANES) and various untargeted metabolomics datasets.
- Chemical scope: Contains correlations for Per- and Polyfluoroalkyl Substances (PFAS), polycyclic aromatic hydrocarbons (PAHs), polychlorinated biphenyls (PCBs), phthalates, tobacco smoke-related metabolites, xenobiotic metabolites such as caffeine and acetaminophen, endogenous metabolites such as acyl-carnitines, and unannotated peaks specific to PFAS.
- Correlation analytics: Performs calculation and compilation of inter-chemical correlation matrices across included metabolomics and exposomics datasets.
- Network graph analysis and visualization: Generates network graphs and visualizations to represent and interpret correlation structures among chemicals.
Scientific Applications:
- Environmental health: Enables investigation of correlated chemical exposure patterns relevant to population-level and individual-level environmental health studies.
- Toxicology: Supports analysis of exposure-related metabolite networks to inform toxicological interpretation of chemical mixtures.
- Personalized medicine and metabolomics research: Facilitates study of chemical–metabolite relationships that may inform individualized exposure profiling and metabolomics investigations.
Methodology:
Compilation of publicly available metabolomics and exposomics data from high-quality human studies, calculation of inter-chemical correlations, and generation of network graph visualizations of correlation structures.
Topics
Details
- License:
- Not licensed
- Tool Type:
- web application
- Operating Systems:
- Mac, Linux, Windows
- Added:
- 7/17/2022
- Last Updated:
- 11/24/2024
Operations
Publications
Barupal DK, Mahajan P, Fakouri-Baygi S, Wright RO, Arora M, Teitelbaum SL. CCDB: A database for exploring inter-chemical correlations in metabolomics and exposomics datasets. Environment International. 2022;164:107240. doi:10.1016/j.envint.2022.107240. PMID:35461097. PMCID:PMC9195052.