CellMAPtracer
CellMAPtracer tracks migratory and proliferating cells in long-term live-cell imaging to quantify migration dynamics and cell-cycle–linked changes in cell behavior.
Key Features:
- Semi-automated supervised tracking: Provides a semi-automated, user-supervised workflow that allows oversight and refinement of automatically detected cell tracks.
- Long-term tracking capability: Enables monitoring of individual cells over extended time courses to capture prolonged migration and proliferation events.
- Multi-daughter division tracking: Detects and follows multi-daughter division events in which a single cell yields more than two daughter cells.
- Quantitative cell-dynamics analysis: Calculates migration metrics such as speed and directionality and assesses changes in these parameters across different cell-cycle phases.
Scientific Applications:
- Fluorescently-labelled BT549 breast cancer cells: Applied to track fluorescently-labelled BT549 cells to monitor their migration and division behavior.
- Daughter cell fate and division analysis: Used to follow dividing cells and assess daughter-cell fate with respect to migration characteristics and cell-cycle dynamics.
- Cell-cycle terminal-phase speed changes: Enabled identification of previously unreported changes in cell speed during the terminal phase of the cell cycle.
Methodology:
Combines advanced imaging with computational tracking algorithms and a semi-automated, user-supervised correction of automatically detected cell tracks.
Topics
Details
- License:
- MIT
- Tool Type:
- desktop application
- Operating Systems:
- Mac, Linux, Windows
- Programming Languages:
- MATLAB, R
- Added:
- 1/18/2021
- Last Updated:
- 2/10/2021
Operations
Publications
Ghannoum S, Antos K, Netto WL, Köhn-Luque A, Farhan H. CellMAPtracer: A user-friendly tracking tool for long-term migratory and proliferating cells. Unknown Journal. 2020. doi:10.1101/2020.06.15.152462.
Downloads
- Software packagehttps://github.com/ocbe-uio/CellMAPtracer/releases/tag/v1.0