CellPAINT

CellPAINT generates molecular-scale illustrations of cells and viruses by assembling molecular ingredients derived from Protein Data Bank (PDB) structural data to support visualization and hypothesis generation.


Key Features:

  • Custom ingredient generation: Creates custom molecular ingredients from Protein Data Bank (PDB) structural data for incorporation into scenes.
  • Interaction mechanisms: Implements interaction mechanisms that define relationships and positioning between molecular ingredients.
  • Grouping and locking: Provides grouping and locking mechanisms to organize and fix components during assembly of complex scenes.
  • Scene assembly and manipulation: Supports organization and manipulation of components to assemble large, intricate cellular and viral scenes while preserving molecular detail.

Scientific Applications:

  • Visualization of cellular and viral assemblies: Produces detailed illustrations of molecular assemblies within cells and viruses for analysis and interpretation.
  • Interpretation of cryoelectron tomograms: Serves as a hypothesis-generating instrument during interpretation of cryoelectron tomograms.

Methodology:

Integration of custom ingredient generation using structural data sourced from the Protein Data Bank (PDB).

Topics

Details

Cost:
Free of charge
Tool Type:
desktop application, web application
Operating Systems:
Mac, Linux, Windows
Added:
4/4/2022
Last Updated:
4/4/2022

Operations

Publications

Gardner A, Autin L, Fuentes D, Maritan M, Barad BA, Medina M, Olson AJ, Grotjahn DA, Goodsell DS. CellPAINT: Turnkey Illustration of Molecular Cell Biology. Frontiers in Bioinformatics. 2021;1. doi:10.3389/fbinf.2021.660936. PMID:34790910. PMCID:PMC8594902.

PMID: 34790910
PMCID: PMC8594902
Funding: - National Institutes of Health: AI150472, GM120604, R01GM133198 - National Science Foundation: DBI-1832184

Documentation

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