CentiServer

CentiServer provides centrality indices and computational methods to identify essential nodes in biological networks.


Key Features:

  • Centrality definitions and algorithms: Over 110 centrality definitions with their associated computational methods and algorithms are documented.
  • Computable centralities: Calculation of 55 distinct centrality measures is supported.
  • Output formats: Computed results can be exported as comma-separated values (CSV) and Graph Modeling Language (GML) files.
  • R package: Implementations of the methods are provided in the centiserve R package.

Scientific Applications:

  • Identification of essential nodes: Use of centrality measures to identify essential nodes in biological networks.
  • Comparative analysis of centralities: Comparison and interpretation of over 110 centrality definitions and their computational methods.

Methodology:

Computation of centrality indices using the documented computational methods and algorithms, including calculation of 55 distinct centralities, with results exportable as CSV and GML and implementations provided in the centiserve R package.

Topics

Details

License:
GPL-3.0
Tool Type:
command-line tool, library, web application
Operating Systems:
Windows, Mac
Programming Languages:
R
Added:
10/14/2018
Last Updated:
12/10/2018

Operations

Publications

Jalili M, Salehzadeh-Yazdi A, Asgari Y, Arab SS, Yaghmaie M, Ghavamzadeh A, Alimoghaddam K. CentiServer: A Comprehensive Resource, Web-Based Application and R Package for Centrality Analysis. PLOS ONE. 2015;10(11):e0143111. doi:10.1371/journal.pone.0143111. PMID:26571275. PMCID:PMC4646361.

Documentation

Links