CGNet

CGNet segments retinal vasculature in optical coherence tomography angiography (OCTA) images to generate vessel segmentation maps for diagnosis and analysis of retinal diseases.


Key Features:

  • End-to-End Three-Stage Architecture: An end-to-end three-stage architecture structures coarse, fine, and refining stages for progressive vessel segmentation.
  • Channel and Position Attention (CPA) modules: Employs channel and position attention (CPA) modules to enhance vessel feature extraction from OCTA images.
  • Graph Reasoning Network (GRN): Uses a graph reasoning network (GRN) to model structural relationships in retinal vasculature.
  • U-shaped encoder-decoder: Implements a U-shaped neural network encoder-decoder in the coarse stage to integrate CPA and GRN for feature extraction.
  • Vessel confidence maps: Generates vessel confidence maps in the coarse stage to highlight potential vascular structures.
  • 3-channel composite merging: Forms a 3-channel composite by merging the confidence map, the original OCTA image, and a fine image map to refine micro-vasculatures.
  • Refining stage fusion: Fuses refined and fine images in the final refining stage to produce the ultimate segmentation result.
  • Validated performance: Reported validation on public datasets with area under the ROC curve (AUC) values of 94.29% and 85.62% across two datasets.

Scientific Applications:

  • Retinal OCTA vessel segmentation: Performs segmentation of retinal vasculature in OCTA images for quantitative and qualitative analysis.
  • Diagnosis and monitoring of retinal diseases: Supports identification of pathological vascular changes to assist diagnosis, early detection, and treatment planning for retinal diseases.

Methodology:

CGNet executes three explicit computational stages: a coarse stage that combines CPA and GRN within a U-shaped encoder-decoder to produce vessel confidence maps; a fine stage that merges confidence maps with the original OCTA image and a fine image map into a 3-channel composite to refine micro-vasculature; and a refining stage that fuses refined and fine images to generate the final segmentation.

Topics

Details

License:
Not licensed
Tool Type:
workflow
Programming Languages:
Python
Added:
9/6/2022
Last Updated:
11/24/2024

Operations

Publications

Yu X, Ge C, Aziz MZ, Li M, Shum PP, Liu L, Mo J. <scp>CGNet</scp>‐assisted Automatic Vessel Segmentation for Optical Coherence Tomography Angiography. Journal of Biophotonics. 2022;15(10). doi:10.1002/jbio.202200067. PMID:35704010.

PMID: 35704010
Funding: - Guangdong Basic and Applied Basic Research Foundation: 2021B1515120013 - National Natural Science Foundation of China: 61705184, 81401451