ChemHub

ChemHub provides a curated knowledgebase of chemicals and their biosynthetic pathways to support selection of target molecules based on chemical function and economic application.


Key Features:

  • Extensive Database: Contains over 90,000 chemicals with detailed descriptions of their functions.
  • Biosynthesis Information: Includes manually curated biosynthetic pathways derived from more than 600,000 published studies, curated by a team of over 100 contributors over the past decade.
  • Algorithmic Support: Implements multiple algorithms to facilitate biosynthetic pathway design and precursor discovery.

Scientific Applications:

  • Pathway Design: Supports design of novel biosynthetic pathways by combining curated pathway information with algorithmic analyses.
  • Precursor Discovery: Enables discovery of candidate precursors for chemical synthesis using algorithmic exploration of biosynthetic data.
  • Target Selection for Economic Applications: Informs selection of chemically and economically viable synthetic targets through functional annotations and pathway context.

Methodology:

Content was compiled via manual extraction and curation of published literature, and the resource implements multiple algorithms for biosynthetic pathway design and precursor discovery.

Topics

Details

Tool Type:
web application
Added:
6/14/2021
Last Updated:
8/20/2021

Operations

Publications

Han M, Zhang D, Ding S, Tian Y, Cheng X, Yuan L, Sun D, Liu D, Gong L, Jia C, Cai P, Tu W, Chen J, Hu Q. ChemHub: a knowledgebase of functional chemicals for synthetic biology studies. Bioinformatics. 2021;37(22):4275-4276. doi:10.1093/bioinformatics/btab360. PMID:33970229.

PMID: 33970229
Funding: - National Key Research and Development Program of China: 2018YFA0900700, 2019YFA0904300, 2020YFA0908300 - National Natural Science Foundation of China: 31700081