CheXT
CheXT integrates a radiomics-guided global-local transformer to perform weakly supervised localization and classification of cardiopulmonary pathologies in chest X-rays using radiomic features and image-level disease labels.
Key Features:
- Radiomics-Guided Transformer (RGT) Architecture: A dual-branch architecture that synergizes global image information with local radiomics-guided auxiliary data.
- Image Transformer Branch: Uses self-attention mechanisms to extract image features and propose bounding boxes for pathology localization.
- Radiomics Transformer Branch: Processes computed radiomic features extracted from the proposed regions.
- Fusion Layers: Aggregates information from both image and radiomic branches to integrate diverse data sources.
- Cross-Attention Mechanism: Implements cross-attention layers to enable interaction between learned image and radiomic features using only image-level disease labels.
- End-to-End Feedback Loop: Provides iterative refinement of pathology localization without requiring explicit bounding box annotations.
Scientific Applications:
- Disease Localization: Weakly supervised localization of cardiopulmonary pathologies in chest X-rays.
- Disease Classification: Improved chest X-ray disease classification by integrating domain-specific radiomic features with image features.
Methodology:
CheXT implements a Radiomics-Guided Transformer with Image and Radiomics Transformer branches employing self-attention, cross-attention, fusion layers, and an end-to-end feedback loop, and is trained on the NIH ChestXRay dataset.
Topics
Details
- License:
- Not licensed
- Cost:
- Free of charge
- Tool Type:
- command-line tool
- Operating Systems:
- Mac, Linux, Windows
- Programming Languages:
- Python
- Added:
- 12/21/2022
- Last Updated:
- 11/24/2024
Operations
Data Inputs & Outputs
Aggregation
Outputs
Publications
Han Y, Holste G, Ding Y, Tewfik A, Peng Y, Wang Z. Radiomics-Guided Global-Local Transformer for Weakly Supervised Pathology Localization in Chest X-Rays. IEEE Transactions on Medical Imaging. 2023;42(3):750-761. doi:10.1109/tmi.2022.3217218. PMID:36288235. PMCID:PMC10081959.