chimeraviz
Chimeraviz is a Bioconductor package that automates the creation of visualizations of fusion transcripts from high-throughput RNA sequencing data. It supports input from nine different fusion-finder tools and provides a visualization framework to integrate RNA data with known genomic features to help prioritize fusion transcript results.
Topic
Data visualisation;Gene transcripts;Genetics
Detail
Operation: Sequence visualisation
Software interface: Library
Language: R
License: The Artistic License 2.0
Cost: Free
Version name: 1.24.0
Credit: The Norwegian Cancer Society, Notur, the Research Council of Norway through its Centers of Excellence funding scheme.
Input: -
Output: -
Contact: Stian Lågstad stianlagstad at gmail.com
Collection: -
Maturity: Mature
Publications
- chimeraviz: a tool for visualizing chimeric RNA.
- Lågstad S, et al. chimeraviz: a tool for visualizing chimeric RNA. chimeraviz: a tool for visualizing chimeric RNA. 2017; 33:2954-2956. doi: 10.1093/bioinformatics/btx329
- https://doi.org/10.1093/bioinformatics/btx329
- PMID: 28525538
- PMC: PMC5870674
Download and documentation
Source: https://bioconductor.org/packages/release/bioc/src/contrib/chimeraviz_1.24.0.tar.gz
Documentation: https://bioconductor.org/packages/release/bioc/vignettes/chimeraviz/inst/doc/chimeraviz-vignette.html
Home page: https://bioconductor.org/packages/release/bioc/html/chimeraviz.html
Links: https://bioconductor.org/packages/release/bioc/manuals/chimeraviz/man/chimeraviz.pdf
< Back to DB search