chngpt

chngpt estimates threshold regression models to identify change points in predictor–outcome relationships for modeling nonlinear effects including two-phase, broken-stick, split-point, structural change, and regression kink models.


Key Features:

  • Variety of Models: Supports four common variants of threshold regression models and related formulations such as two-phase regression, broken-stick regression, split-point regression, structural change models, and regression kink models.
  • Covariate Adjustment: Allows inclusion and adjustment of additional covariates that are not subjected to thresholding.
  • Estimation and Hypothesis Testing: Provides functionalities for estimating model parameters and conducting hypothesis tests for threshold effects.
  • Consistency and Reliability: Uses Monte Carlo studies to demonstrate consistency of estimation procedures and maintenance of appropriate type I error rates in testing.

Scientific Applications:

  • MTCT of HIV-1 and immune biomarkers: Applied to analysis of immune response biomarkers in Mother-To-Child Transmission (MTCT) of HIV-1 to investigate threshold effects relevant to transmission and treatment responses.

Methodology:

Estimation and hypothesis testing of threshold regression models, identification of change points/thresholds, and Monte Carlo studies to evaluate estimator consistency and type I error rates.

Topics

Details

License:
GPL-2.0
Tool Type:
library
Operating Systems:
Linux, Windows, Mac
Programming Languages:
R
Added:
8/5/2018
Last Updated:
12/10/2018

Operations

Publications

Fong Y, Huang Y, Gilbert PB, Permar SR. chngpt: threshold regression model estimation and inference. BMC Bioinformatics. 2017;18(1). doi:10.1186/s12859-017-1863-x. PMID:29037149. PMCID:PMC5644082.

PMID: 29037149
PMCID: PMC5644082
Funding: - National Institute of Allergy and Infectious Diseases: R01-AI122991, UM1-AI068635 - National Institute of General Medical Sciences: R01-GM106177

Documentation