chngpt
chngpt estimates threshold regression models to identify change points in predictor–outcome relationships for modeling nonlinear effects including two-phase, broken-stick, split-point, structural change, and regression kink models.
Key Features:
- Variety of Models: Supports four common variants of threshold regression models and related formulations such as two-phase regression, broken-stick regression, split-point regression, structural change models, and regression kink models.
- Covariate Adjustment: Allows inclusion and adjustment of additional covariates that are not subjected to thresholding.
- Estimation and Hypothesis Testing: Provides functionalities for estimating model parameters and conducting hypothesis tests for threshold effects.
- Consistency and Reliability: Uses Monte Carlo studies to demonstrate consistency of estimation procedures and maintenance of appropriate type I error rates in testing.
Scientific Applications:
- MTCT of HIV-1 and immune biomarkers: Applied to analysis of immune response biomarkers in Mother-To-Child Transmission (MTCT) of HIV-1 to investigate threshold effects relevant to transmission and treatment responses.
Methodology:
Estimation and hypothesis testing of threshold regression models, identification of change points/thresholds, and Monte Carlo studies to evaluate estimator consistency and type I error rates.
Topics
Details
- License:
- GPL-2.0
- Tool Type:
- library
- Operating Systems:
- Linux, Windows, Mac
- Programming Languages:
- R
- Added:
- 8/5/2018
- Last Updated:
- 12/10/2018
Operations
Publications
Fong Y, Huang Y, Gilbert PB, Permar SR. chngpt: threshold regression model estimation and inference. BMC Bioinformatics. 2017;18(1). doi:10.1186/s12859-017-1863-x. PMID:29037149. PMCID:PMC5644082.
PMID: 29037149
PMCID: PMC5644082
Funding: - National Institute of Allergy and Infectious Diseases: R01-AI122991, UM1-AI068635
- National Institute of General Medical Sciences: R01-GM106177