CHOIRBM
CHOIRBM provides R functions for exploratory data analysis and visualization of pain patient body map data, enabling quantification and display of the extent and location of patient-reported pain using the CHOIR Body Map (CBM).
Key Features:
- R package: Exposes functions in R for analysis and plotting of pain patient body map data.
- Grammar-of-graphics modular design: Built on a grammar-of-graphics modular framework to support extensible plotting constructs.
- ggplot2 integration: Leverages ggplot2 for plotting, theming, and compatibility with the R graphics ecosystem.
- CHOIR Body Map (CBM) support: Processes and analyzes body map data formatted according to the CHOIR Body Map (CBM).
- Dual-level analysis: Provides functions for both individual patient–level and large-dataset (cohort) level analysis and plotting.
- Exploratory analysis and visualization: Implements routines for exploratory data analysis and visual representation of pain distribution across the body.
Scientific Applications:
- Clinical pain mapping: Characterizing spatial distribution of patient-reported pain to inform diagnosis and treatment planning.
- Population-level research: Enabling large-scale studies to identify patterns of pain across populations using body map data.
Methodology:
Uses ggplot2 within a grammar-of-graphics modular framework and provides functions for analysis and plotting of CHOIR Body Map (CBM) data at individual and cohort levels.
Topics
Details
- License:
- MIT
- Cost:
- Free of charge
- Tool Type:
- library
- Operating Systems:
- Mac, Linux, Windows
- Programming Languages:
- R
- Added:
- 12/27/2022
- Last Updated:
- 11/24/2024
Operations
Data Inputs & Outputs
Aggregation
Inputs
Outputs
Publications
Cramer E, Ziadni M, Scherrer KH, Mackey S, Kao M. CHOIRBM: An R package for exploratory data analysis and interactive visualization of pain patient body map data. PLOS Computational Biology. 2022;18(10):e1010496. doi:10.1371/journal.pcbi.1010496. PMID:36301800. PMCID:PMC9612541.
PMID: 36301800
PMCID: PMC9612541
Funding: - National Institute on Drug Abuse: K23DA047473, K24 DA029262, T32 DA035165
- National Institute of Neurological Disorders and Stroke: K24NS126781, R61 NS11865