CHOIRBM

CHOIRBM provides R functions for exploratory data analysis and visualization of pain patient body map data, enabling quantification and display of the extent and location of patient-reported pain using the CHOIR Body Map (CBM).


Key Features:

  • R package: Exposes functions in R for analysis and plotting of pain patient body map data.
  • Grammar-of-graphics modular design: Built on a grammar-of-graphics modular framework to support extensible plotting constructs.
  • ggplot2 integration: Leverages ggplot2 for plotting, theming, and compatibility with the R graphics ecosystem.
  • CHOIR Body Map (CBM) support: Processes and analyzes body map data formatted according to the CHOIR Body Map (CBM).
  • Dual-level analysis: Provides functions for both individual patient–level and large-dataset (cohort) level analysis and plotting.
  • Exploratory analysis and visualization: Implements routines for exploratory data analysis and visual representation of pain distribution across the body.

Scientific Applications:

  • Clinical pain mapping: Characterizing spatial distribution of patient-reported pain to inform diagnosis and treatment planning.
  • Population-level research: Enabling large-scale studies to identify patterns of pain across populations using body map data.

Methodology:

Uses ggplot2 within a grammar-of-graphics modular framework and provides functions for analysis and plotting of CHOIR Body Map (CBM) data at individual and cohort levels.

Topics

Details

License:
MIT
Cost:
Free of charge
Tool Type:
library
Operating Systems:
Mac, Linux, Windows
Programming Languages:
R
Added:
12/27/2022
Last Updated:
11/24/2024

Operations

Data Inputs & Outputs

Aggregation

Outputs

    Publications

    Cramer E, Ziadni M, Scherrer KH, Mackey S, Kao M. CHOIRBM: An R package for exploratory data analysis and interactive visualization of pain patient body map data. PLOS Computational Biology. 2022;18(10):e1010496. doi:10.1371/journal.pcbi.1010496. PMID:36301800. PMCID:PMC9612541.

    PMID: 36301800
    PMCID: PMC9612541
    Funding: - National Institute on Drug Abuse: K23DA047473, K24 DA029262, T32 DA035165 - National Institute of Neurological Disorders and Stroke: K24NS126781, R61 NS11865

    Links