CiLiQuant

This tool separates junction reads based on their linear or circular origin. Only non-ambiguous junction reads are used to compare the relative linear and circular transcript abundance. Together with the circ fraction (circ/(circ+lin)), a 95% confidence interval is provided.

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Topics

Functional, regulatory and non-coding RNA RNA splicing

Details

License:: BSD-3-Clause
Cost:: Free of charge
Tool Type:: command-line tool
Operating Systems:: Mac, Linux, Windows
Programming Languages:: Python
Added:: 1/12/2021
Last Updated:: 10/1/2021

Operations

RNA structure prediction
Sequence classification

Documentation

Command-line options', 'User manual

https://github.com/OncoRNALab/CiLiQuant

Downloads

Source code
https://github.com/OncoRNALab/CiLiQuant
Test data
https://github.com/almorlio/CiLiQuant

Links

Repository

https://github.com/OncoRNALab/CiLiQuant

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