circR2Cancer

circR2Cancer provides a curated database of experimentally verified associations between circular RNAs (circRNAs) and human cancers to support investigation of circRNA roles in oncogenesis and cancer progression.


Key Features:

  • Manual curation: Data were manually curated from the literature and databases to ensure high-quality, experimentally supported circRNA–cancer associations.
  • Extensive associations: Contains 1,439 experimentally supported associations involving 1,135 distinct circRNAs across 82 cancer types.
  • Database integration: Integrates circRNA annotations from circBase and cancer terms from Disease Ontology.

Scientific Applications:

  • Regulatory mechanism research: Enables investigation of regulatory mechanisms by which circRNAs influence cancer development and progression.
  • Biomarker discovery: Supports identification of candidate circRNA biomarkers for cancer diagnosis, prognosis, or therapeutic targeting.
  • Therapeutic development: Facilitates exploration of circRNA–cancer interactions to inform development of RNA-based therapeutic strategies.

Methodology:

Data were extracted from scientific literature and existing databases and then subjected to manual curation to include only experimentally validated circRNA–cancer associations.

Topics

Details

Tool Type:
web application
Added:
1/18/2021
Last Updated:
2/11/2021

Operations

Publications

Lan W, Zhu M, Chen Q, Chen B, Liu J, Li M, Chen YP. CircR2Cancer: a manually curated database of associations between circRNAs and cancers. Database. 2020;2020. doi:10.1093/database/baaa085. PMID:33181824. PMCID:PMC7661096.

PMID: 33181824
PMCID: PMC7661096
Funding: - National Natural Science Foundation of China: 62072124, 61702122, 61963004 and 61972185 - Natural Science Foundation of Guangxi Zhuang Autonomous Region: 2017GXNSFDA198033 and 2018GXNSFBA281193 - Science and Technology Base and talent Special project of Guangxi: AD20159044 - Key Research and Development Plan of Guangxi: AB17195055 - the foundation of Guangxi University: 20190240 and XBZ180476 - the Natural Science Foundation of Yunnan Province of China: 2019FA024 - Hunan Provincial Science and Technology Program: 2018WK4001 - the scientific Research Foundation of Hunan Provincial Education Department: 18B469