CIRDataset
CIRDataset provides a curated dataset and associated deep learning models for clinically-interpretable radiomic analysis of lung nodule spiculations and lobulations to support malignancy prediction.
Key Features:
- Extensive Annotations: 956 annotations of spiculations and lobulations on segmented lung nodules with radiologist QA/QC to ensure clinical accuracy.
- Comprehensive Data Sources: Aggregated cases from LIDC-IDRI (N=883) and LUNGx (N=73).
- Multi-class Voxel2Mesh Model: An end-to-end deep learning model based on a multi-class Voxel2Mesh extension that segments nodules while preserving spike geometry, classifies spikes into sharp/spiculation and curved/lobulation categories, and predicts malignancy.
- Integration of Clinically-Reported Features: Incorporation of clinically-relevant features (spiculations and lobulations) to enable benchmarking and validation of malignancy prediction algorithms.
Scientific Applications:
- Lung Nodule Malignancy Prediction: Development and evaluation of algorithms that predict malignancy using annotated spiculation and lobulation features.
- Radiomics Interpretability: Research to improve interpretability of AI-driven predictions by linking radiomic features to clinical criteria such as Lung-RADS.
- Algorithm Benchmarking and Validation: Quantitative comparison and validation of segmentation, spike classification, and malignancy prediction methods against radiologist-annotated ground truth.
Methodology:
Radiologists performed meticulous annotations and QA/QC of spiculations and lobulations which were integrated into an end-to-end deep learning framework using a multi-class Voxel2Mesh extension for segmentation, spike classification, and malignancy prediction.
Topics
Details
- License:
- Not licensed
- Tool Type:
- command-line tool
- Programming Languages:
- Python
- Added:
- 1/8/2023
- Last Updated:
- 11/24/2024
Operations
Publications
Choi W, Dahiya N, Nadeem S. CIRDataset: A Large-Scale Dataset for Clinically-Interpretable Lung Nodule Radiomics and Malignancy Prediction. Lecture Notes in Computer Science. 2022. doi:10.1007/978-3-031-16443-9_2. PMID:36198166. PMCID:PMC9527770.