Classifyber
Classifyber segments white matter bundles from diffusion Magnetic Resonance Imaging (dMRI) by applying a supervised streamline-based linear classifier for delineation of white matter pathways.
Key Features:
- Supervised streamline-based segmentation: Operates on tractography-derived streamlines using supervised learning to assign streamlines to white matter bundles.
- Linear classifier: Implements a linear model that combines multiple feature sources into a single decision boundary for streamline classification.
- Integrated information sources: Leverages anatomical atlases, connectivity patterns, and geometric characteristics of fiber pathways as input features.
- Input data: Processes diffusion Magnetic Resonance Imaging (dMRI) data and tractography outputs.
- Robustness to methodological variation: Targets robustness across diverse tracking methodologies, bundle sizes, and data qualities.
- Segmentation performance: Demonstrates improved segmentation outcomes across multiple datasets ranging from research-focused to clinical applications.
Scientific Applications:
- Pre-surgical planning: Facilitates delineation of patient-specific white matter bundles to inform surgical approaches.
- Connectomics: Enables bundle-level analyses for connectomics studies using dMRI-derived tractography.
- White matter pathway delineation: Supports virtual delineation and comparative analysis of white matter pathways in research and clinical dMRI datasets.
Methodology:
Supervised streamline-based linear classification applied to tractography streamlines, integrating anatomical atlas labels, connectivity-derived features, and geometric descriptors into a linear model.
Topics
Details
- Tool Type:
- web application
- Added:
- 1/18/2021
- Last Updated:
- 11/24/2024
Operations
Publications
Bertò G, Bullock D, Astolfi P, Hayashi S, Zigiotto L, Annicchiarico L, Corsini F, Benedictis AD, Sarubbo S, Pestilli F, Avesani P, Olivetti E. Classifyber, a robust streamline-based linear classifier for white matter bundle segmentation. Unknown Journal. 2020. doi:10.1101/2020.02.10.942714.
Bertò G, Bullock D, Astolfi P, Hayashi S, Zigiotto L, Annicchiarico L, Corsini F, De Benedictis A, Sarubbo S, Pestilli F, Avesani P, Olivetti E. Classifyber, a robust streamline-based linear classifier for white matter bundle segmentation. NeuroImage. 2021;224:117402. doi:10.1016/j.neuroimage.2020.117402. PMID:32979520.