Classifyber

Classifyber segments white matter bundles from diffusion Magnetic Resonance Imaging (dMRI) by applying a supervised streamline-based linear classifier for delineation of white matter pathways.


Key Features:

  • Supervised streamline-based segmentation: Operates on tractography-derived streamlines using supervised learning to assign streamlines to white matter bundles.
  • Linear classifier: Implements a linear model that combines multiple feature sources into a single decision boundary for streamline classification.
  • Integrated information sources: Leverages anatomical atlases, connectivity patterns, and geometric characteristics of fiber pathways as input features.
  • Input data: Processes diffusion Magnetic Resonance Imaging (dMRI) data and tractography outputs.
  • Robustness to methodological variation: Targets robustness across diverse tracking methodologies, bundle sizes, and data qualities.
  • Segmentation performance: Demonstrates improved segmentation outcomes across multiple datasets ranging from research-focused to clinical applications.

Scientific Applications:

  • Pre-surgical planning: Facilitates delineation of patient-specific white matter bundles to inform surgical approaches.
  • Connectomics: Enables bundle-level analyses for connectomics studies using dMRI-derived tractography.
  • White matter pathway delineation: Supports virtual delineation and comparative analysis of white matter pathways in research and clinical dMRI datasets.

Methodology:

Supervised streamline-based linear classification applied to tractography streamlines, integrating anatomical atlas labels, connectivity-derived features, and geometric descriptors into a linear model.

Topics

Details

Tool Type:
web application
Added:
1/18/2021
Last Updated:
11/24/2024

Operations

Publications

Bertò G, Bullock D, Astolfi P, Hayashi S, Zigiotto L, Annicchiarico L, Corsini F, Benedictis AD, Sarubbo S, Pestilli F, Avesani P, Olivetti E. Classifyber, a robust streamline-based linear classifier for white matter bundle segmentation. Unknown Journal. 2020. doi:10.1101/2020.02.10.942714.

Bertò G, Bullock D, Astolfi P, Hayashi S, Zigiotto L, Annicchiarico L, Corsini F, De Benedictis A, Sarubbo S, Pestilli F, Avesani P, Olivetti E. Classifyber, a robust streamline-based linear classifier for white matter bundle segmentation. NeuroImage. 2021;224:117402. doi:10.1016/j.neuroimage.2020.117402. PMID:32979520.

PMID: 32979520
Funding: - National Science Foundation: AOC-1916518, BCS-1734853, IIS-1636893

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