clustering_resume

clustering_resume summarizes clustering outputs by generating a summary tab from CD-HIT and CROP results to support interpretation of datasets produced by next-generation DNA sequencing.


Key Features:

  • Data Summarization: Compiles and summarizes clustering outputs into a concise summary tab for downstream interpretation and analysis.
  • Integration with CD-HIT and CROP: Processes clustering results produced by CD-HIT and CROP.
  • High-throughput sequencing compatibility: Targets large-scale datasets produced by high-throughput technologies such as next-generation DNA sequencing.
  • Galaxy framework tracking: Operates within the Galaxy framework where computational steps are tracked automatically.

Scientific Applications:

  • Biomedical research: Facilitates interpretation of large-scale clustering analyses from genomic and clinical sequencing datasets.
  • Genomics workflows: Provides summarized clustering outputs for downstream analyses in genomics and related fields.

Methodology:

Generates a summary tab from clustering outputs produced by CD-HIT and CROP and runs within the Galaxy framework where computational steps are tracked automatically.

Topics

Collections

Details

Maturity:
Mature
Tool Type:
web application
Operating Systems:
Linux, Windows, Mac
Added:
12/19/2016
Last Updated:
11/25/2024

Operations

Data Inputs & Outputs

Publications

Afgan E, Baker D, van den Beek M, Blankenberg D, Bouvier D, Čech M, Chilton J, Clements D, Coraor N, Eberhard C, Grüning B, Guerler A, Hillman-Jackson J, Von Kuster G, Rasche E, Soranzo N, Turaga N, Taylor J, Nekrutenko A, Goecks J. The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2016 update. Nucleic Acids Research. 2016;44(W1):W3-W10. doi:10.1093/nar/gkw343. PMID:27137889. PMCID:PMC4987906.

Mareuil F, Doppelt-Azeroual O, Ménager H. A public Galaxy platform at Pasteur used as an execution engine for web services. Unknown Journal. 2017. doi:10.7490/f1000research.1114334.1.

Links